View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_183 (Length: 254)
Name: NF10092A_low_183
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_183 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 32124762 - 32124998
Alignment:
| Q |
7 |
ataaatactaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacgtttaaaaaagggttaaacctggaattccaatttta |
106 |
Q |
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| T |
32124762 |
ataaatgctaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaaggattaaacctggaattccaatttta |
32124861 |
T |
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| Q |
107 |
cctgttgtagtcaattt-acttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtcacacgcat |
205 |
Q |
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| T |
32124862 |
cctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtcacacgcat |
32124961 |
T |
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| Q |
206 |
ttactcccttattcccgctctaaatgaagaacatatt |
242 |
Q |
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| T |
32124962 |
ttattcccttattcccgctctaaatgaagaacatatt |
32124998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 32150118 - 32150184
Alignment:
| Q |
15 |
taaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacgtttaaaaaaggg |
83 |
Q |
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| T |
32150118 |
taaaaattcactataagtgaaggaaattatgtagggtctctc--taataggcacacttttataaaaggg |
32150184 |
T |
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