View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_184 (Length: 254)

Name: NF10092A_low_184
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_184
NF10092A_low_184
[»] chr7 (10 HSPs)
chr7 (13-248)||(1595498-1595733)
chr7 (13-248)||(1541953-1542188)
chr7 (115-223)||(1105427-1105535)
chr7 (13-227)||(1557897-1558105)
chr7 (114-227)||(1603846-1603962)
chr7 (142-236)||(3956074-3956168)
chr7 (13-75)||(1604001-1604063)
chr7 (174-223)||(1551375-1551424)
chr7 (126-227)||(2329174-2329275)
chr7 (126-227)||(2337073-2337174)
[»] chr8 (6 HSPs)
chr8 (13-223)||(18749649-18749853)
chr8 (13-223)||(18723997-18724201)
chr8 (115-227)||(18739865-18739977)
chr8 (115-227)||(18744829-18744941)
chr8 (18-71)||(18739729-18739782)
chr8 (18-71)||(18744693-18744746)
[»] scaffold0491 (3 HSPs)
scaffold0491 (13-223)||(6490-6694)
scaffold0491 (115-227)||(1744-1856)
scaffold0491 (18-71)||(1608-1661)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 1595733 - 1595498
Alignment:
Q  13 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |||||| | |||| |||||| ||||| |||||||||||||||||||||||    
T  1595733 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggctggaatttgctaaatgaacatacatcagaattttcccttgttgttgtgtta 1595634  T
Q  113 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1595633 agctgaagacaacttggaaagggaccctccaaacaattgtatgaaatgtccacataatagacattacagagagattggggaattgtgccagtgagattat 1595534  T
Q  213 tattgcttaaattaaatctgtaaatgtagacaatat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  1595533 tattgcttaaattaaatctgtaaatgtagacaatat 1595498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 1541953 - 1542188
Alignment:
Q  13 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | |||| ||||||| ||||| ||  ||||||| | |    
T  1541953 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggctggaattggttaaatggacatacatcatagttttcgctgtttgttgtataa 1542052  T
Q  113 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 212  Q
    ||   | ||||| |||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||    
T  1542053 agaccaggacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataattgacatcacagagagattggggaattgttccagtgagattat 1542152  T
Q  213 tattgcttaaattaaatctgtaaatgtagacaatat 248  Q
    |||||||||||||||   ||||||||||| ||||||    
T  1542153 tattgcttaaattaaggttgtaaatgtagtcaatat 1542188  T

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Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 1105535 - 1105427
Alignment:
Q  115 ctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattatta 214  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  1105535 ctgaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataatcgacattacagagagattggggaattgttccagtgagattatta 1105436  T
Q  215 ttgcttaaa 223  Q
    |||||||||    
T  1105435 ttgcttaaa 1105427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 1557897 - 1558105
Alignment:
Q  13 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| |||||| ||||| ||||||||             ||    
T  1557897 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggctggaatttgttaaatgaacatacatcagaattttcc------------ata 1557984  T
Q  113 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataat------aggcattacagagagattggggaattgtgccagtga 206  Q
     | | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||      |   |||||||||||||||||||||||| |||||||    
T  1557985 tgatcaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataataattgaataaattacagagagattggggaattgttccagtga 1558084  T
Q  207 gattattattgcttaaattaa 227  Q
    |||||||||||||||||||||    
T  1558085 gattattattgcttaaattaa 1558105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 1603962 - 1603846
Alignment:
Q  114 gctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataata---ggcattacagagagattggggaattgtgccagtgagatt 210  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||   |  |||||||||||||||||||||||| |||| ||||||    
T  1603962 gctgaagacaatttggaatgggatcctccaaacaattgtatgaaatgtccacataataatagaaattacagagagattggggaattgttccagagagatt 1603863  T
Q  211 attattgcttaaattaa 227  Q
    |||||||||||||||||    
T  1603862 attattgcttaaattaa 1603846  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 3956074 - 3956168
Alignment:
Q  142 caaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattattattgcttaaattaaatctgtaaa 236  Q
    |||||||||||| |||||||||| |||| |  ||||||||||||||||||| || || ||| ||||||||||||| |||||||||| | ||||||    
T  3956074 caaacaattgtaagaaatgtccagataaaaaacattacagagagattggggtatcgttccactgagattattattacttaaattaagtttgtaaa 3956168  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 1604063 - 1604001
Alignment:
Q  13 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaa 75  Q
    |||| |||||||||||||||| |||||||||||||||  || ||||||  |||||||||||||    
T  1604063 gacaacaatgtgctttaattttttatttttcttgtgtattggccaaggatggaattggttaaa 1604001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 1551375 - 1551424
Alignment:
Q  174 cattacagagagattggggaattgtgccagtgagattattattgcttaaa 223  Q
    ||||||| | ||| ||||||||||| |||||||||||||||| |||||||    
T  1551375 cattacaaatagaatggggaattgttccagtgagattattatggcttaaa 1551424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 2329275 - 2329174
Alignment:
Q  126 ttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattattattgcttaaatt 225  Q
    ||||||| |||||||  |||  |||| | |||||||||||||||| | ||||||| |||||||||||||     || || ||||||||||| ||||||||    
T  2329275 ttggaagaggaccctttaaatgattgaaggaaatgtccacataattgacattacaaagagattggggaaacactcctgtaagattattattccttaaatt 2329176  T
Q  226 aa 227  Q
    ||    
T  2329175 aa 2329174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 2337174 - 2337073
Alignment:
Q  126 ttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattattattgcttaaatt 225  Q
    ||||||| |||||||  |||  |||| | |||||||||||||||| | ||||||| |||||||||||||     || || ||||||||||| ||||||||    
T  2337174 ttggaagaggaccctttaaatgattgaaggaaatgtccacataattgacattacaaagagattggggaaacactcctgtaagattattattccttaaatt 2337075  T
Q  226 aa 227  Q
    ||    
T  2337074 aa 2337073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 18749649 - 18749853
Alignment:
Q  13 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||  |||| |||||||| |  | |||||        
T  18749649 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggttggaactggttaaatgaacatatatcagaattttccatcttcgttgt---- 18749744  T
Q  113 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 212  Q
      |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| |||||||||||||    
T  18749745 --ctgaagacaaattggaatgggacccttcaaacaattgtatgaaatgtccacataaatgacattgcagagagattggggaattgttccagtgagattat 18749842  T
Q  213 tattgcttaaa 223  Q
    |||| ||||||    
T  18749843 tatttcttaaa 18749853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 18723997 - 18724201
Alignment:
Q  13 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||| |||||||  |  | ||||| |      
T  18723997 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggttggaactggttaaatgaacatacatcagaattttcgatcttcgttgtat-- 18724094  T
Q  113 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 212  Q
        |||||||| |||||| |||||||| ||||||||||||||||||||||||||||  | | ||||||||||||||||||||||| |||||||||||||    
T  18724095 ----gaagacaatttggaatgggacccttcaaacaattgtatgaaatgtccacataaatgactttacagagagattggggaattgttccagtgagattat 18724190  T
Q  213 tattgcttaaa 223  Q
    |||| ||||||    
T  18724191 tatttcttaaa 18724201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 18739865 - 18739977
Alignment:
Q  115 ctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattatta 214  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  18739865 ctgaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataatagacattacagagagattggggaattgttccagtgagattatta 18739964  T
Q  215 ttgcttaaattaa 227  Q
    |||||||||||||    
T  18739965 ttgcttaaattaa 18739977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 18744829 - 18744941
Alignment:
Q  115 ctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattatta 214  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  18744829 ctgaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataatagacattacagagagattggggaattgttccagtgagattatta 18744928  T
Q  215 ttgcttaaattaa 227  Q
    |||||||||||||    
T  18744929 ttgcttaaattaa 18744941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 18739729 - 18739782
Alignment:
Q  18 caatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggt 71  Q
    |||||||||||||||| |||||||||||||||| || ||||||  |||||||||    
T  18739729 caatgtgctttaattttttatttttcttgtgtgttggccaaggatggaattggt 18739782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 18744693 - 18744746
Alignment:
Q  18 caatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggt 71  Q
    |||||||||||||||| |||||||||||||||| || ||||||  |||||||||    
T  18744693 caatgtgctttaattttttatttttcttgtgtgttggccaaggatggaattggt 18744746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 6490 - 6694
Alignment:
Q  13 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||| |||||||  |  | ||||| |      
T  6490 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggttggaactggttaaatgaacatacatcagaattttcgatcttcgttgtat-- 6587  T
Q  113 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 212  Q
        |||||||| |||||| |||||||| ||||||||||||||||||||||||||||  | | ||||||||||||||||||||||| |||||||||||||    
T  6588 ----gaagacaatttggaatgggacccttcaaacaattgtatgaaatgtccacataaatgactttacagagagattggggaattgttccagtgagattat 6683  T
Q  213 tattgcttaaa 223  Q
    |||| ||||||    
T  6684 tatttcttaaa 6694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 1744 - 1856
Alignment:
Q  115 ctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattatta 214  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  1744 ctgaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataatagacattacagagagattggggaattgttccagtgagattatta 1843  T
Q  215 ttgcttaaattaa 227  Q
    |||||||||||||    
T  1844 ttgcttaaattaa 1856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1608 - 1661
Alignment:
Q  18 caatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggt 71  Q
    |||||||||||||||| |||||||||||||||| || ||||||  |||||||||    
T  1608 caatgtgctttaattttttatttttcttgtgtgttggccaaggatggaattggt 1661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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