View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_186 (Length: 253)
Name: NF10092A_low_186
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_186 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 45200841 - 45200606
Alignment:
| Q |
7 |
gacctcgtaagtttttctactttgtgaatgttttgattgacggtgaagcgtagcattagaatcacgatgagtcattgtgattttggtaaaagccatacat |
106 |
Q |
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| T |
45200841 |
gacctcgtaagtttttctactttgtgaatgttttgattgacggtgaagcgtagctttagaatcacgatgagtcattgtgattttggtaaaagccatactt |
45200742 |
T |
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| Q |
107 |
agcctcaacaaaatcatgatgtcaccgtgattttgacaaactcacagtttgttacattttattttttacaatctatgaataacagacattgacatgtcga |
206 |
Q |
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| T |
45200741 |
agcttcaacaaaatcataatgtcactgtgattttgaaaaactcaccgtttgttacattttatttgttacaatctatgaataacagacattgacatgtcga |
45200642 |
T |
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| Q |
207 |
caacaataatcaattgtcggtgtggtgttgatgtcc |
242 |
Q |
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| T |
45200641 |
caacaataatcatttgtcggtgtggtgttgatgtcc |
45200606 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 27870947 - 27870987
Alignment:
| Q |
111 |
tcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
151 |
Q |
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| T |
27870947 |
tcaacaaaatcatggtgtcaccgtgattttatcaaactcac |
27870987 |
T |
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