View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_187 (Length: 253)

Name: NF10092A_low_187
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_187
NF10092A_low_187
[»] chr7 (19 HSPs)
chr7 (15-253)||(5290631-5290857)
chr7 (59-164)||(8309810-8309914)
chr7 (33-164)||(17879743-17879873)
chr7 (37-106)||(29936080-29936149)
chr7 (48-134)||(21019387-21019472)
chr7 (59-146)||(20052750-20052835)
chr7 (44-136)||(18418670-18418764)
chr7 (48-119)||(19141718-19141790)
chr7 (48-119)||(20741117-20741189)
chr7 (48-106)||(13175296-13175355)
chr7 (139-173)||(4447057-4447091)
chr7 (37-106)||(11792263-11792333)
chr7 (48-106)||(13681881-13681939)
chr7 (48-136)||(18440755-18440845)
chr7 (59-120)||(19143479-19143539)
chr7 (38-106)||(19711745-19711814)
chr7 (59-120)||(20742878-20742938)
chr7 (37-101)||(39285242-39285307)
chr7 (48-165)||(1878895-1879013)
[»] chr2 (22 HSPs)
chr2 (41-159)||(33014060-33014177)
chr2 (49-164)||(24109987-24110099)
chr2 (60-192)||(12060401-12060534)
chr2 (39-120)||(28789913-28789994)
chr2 (37-106)||(18702093-18702163)
chr2 (45-106)||(38040586-38040648)
chr2 (59-120)||(8684997-8685057)
chr2 (37-106)||(25828515-25828584)
chr2 (31-120)||(26655340-26655430)
chr2 (48-106)||(23393345-23393404)
chr2 (37-106)||(24376459-24376529)
chr2 (31-120)||(27766170-27766259)
chr2 (45-106)||(38033427-38033489)
chr2 (37-75)||(38631106-38631144)
chr2 (37-106)||(14794468-14794537)
chr2 (59-120)||(21770297-21770357)
chr2 (59-120)||(21822977-21823037)
chr2 (138-167)||(33240232-33240261)
chr2 (138-167)||(33248153-33248182)
chr2 (51-106)||(19498585-19498641)
chr2 (48-120)||(19878575-19878647)
chr2 (48-120)||(23958920-23958992)
[»] chr4 (27 HSPs)
chr4 (33-161)||(8501840-8501968)
chr4 (57-164)||(13977895-13978000)
chr4 (51-164)||(12235717-12235829)
chr4 (49-164)||(43357702-43357816)
chr4 (31-120)||(19052696-19052779)
chr4 (55-244)||(46978989-46979179)
chr4 (37-92)||(12600112-12600167)
chr4 (31-138)||(19556053-19556157)
chr4 (51-138)||(22223440-22223525)
chr4 (37-106)||(3395002-3395072)
chr4 (37-106)||(6641037-6641106)
chr4 (18-195)||(15522014-15522191)
chr4 (48-106)||(31267399-31267457)
chr4 (51-120)||(15736190-15736259)
chr4 (38-120)||(22317360-22317443)
chr4 (37-85)||(8686154-8686202)
chr4 (37-100)||(37986307-37986371)
chr4 (48-106)||(14711385-14711444)
chr4 (48-106)||(14779049-14779108)
chr4 (48-106)||(19241613-19241672)
chr4 (45-106)||(36210716-36210778)
chr4 (45-149)||(39532265-39532370)
chr4 (48-101)||(17994365-17994418)
chr4 (49-101)||(5718893-5718945)
chr4 (52-120)||(15366282-15366350)
chr4 (60-100)||(17133350-17133390)
chr4 (48-92)||(33377773-33377817)
[»] chr5 (13 HSPs)
chr5 (48-164)||(22185443-22185558)
chr5 (38-164)||(26013205-26013329)
chr5 (59-157)||(17241057-17241157)
chr5 (51-172)||(19903036-19903154)
chr5 (51-109)||(24495190-24495248)
chr5 (38-106)||(9399329-9399398)
chr5 (59-120)||(22747802-22747862)
chr5 (48-106)||(20215829-20215888)
chr5 (48-106)||(23477741-23477800)
chr5 (48-106)||(23487917-23487976)
chr5 (48-106)||(40033451-40033510)
chr5 (37-106)||(643413-643483)
chr5 (37-106)||(13546234-13546304)
[»] scaffold0010 (2 HSPs)
scaffold0010 (50-173)||(135602-135723)
scaffold0010 (48-106)||(61099-61158)
[»] chr3 (22 HSPs)
chr3 (37-244)||(19264087-19264293)
chr3 (67-164)||(27685507-27685604)
chr3 (38-120)||(4500950-4501033)
chr3 (38-120)||(19905286-19905368)
chr3 (37-105)||(16031953-16032021)
chr3 (77-138)||(11073852-11073912)
chr3 (18-100)||(47596601-47596683)
chr3 (45-109)||(13292237-13292301)
chr3 (38-109)||(14427701-14427773)
chr3 (47-106)||(49989628-49989688)
chr3 (40-118)||(4234846-4234922)
chr3 (48-106)||(13147661-13147720)
chr3 (48-106)||(13953631-13953690)
chr3 (48-106)||(15832776-15832835)
chr3 (48-106)||(31114594-31114653)
chr3 (51-137)||(10917655-10917738)
chr3 (37-106)||(13931353-13931423)
chr3 (77-135)||(16201833-16201889)
chr3 (37-106)||(20724445-20724515)
chr3 (48-120)||(17035123-17035195)
chr3 (37-117)||(17239643-17239724)
chr3 (45-109)||(13362906-13362970)
[»] chr1 (23 HSPs)
chr1 (40-114)||(21721631-21721705)
chr1 (60-159)||(16422789-16422887)
chr1 (38-120)||(30497418-30497500)
chr1 (80-164)||(9558749-9558830)
chr1 (31-109)||(12397193-12397266)
chr1 (51-120)||(12669815-12669883)
chr1 (44-101)||(14969203-14969260)
chr1 (51-120)||(19019845-19019913)
chr1 (37-106)||(28492935-28493004)
chr1 (50-105)||(19965857-19965911)
chr1 (48-106)||(21541172-21541231)
chr1 (48-106)||(22018699-22018758)
chr1 (48-106)||(23926430-23926489)
chr1 (48-106)||(26548911-26548970)
chr1 (37-75)||(2834014-2834052)
chr1 (37-106)||(12283779-12283849)
chr1 (48-136)||(18311587-18311677)
chr1 (48-101)||(22642231-22642285)
chr1 (50-100)||(31587494-31587544)
chr1 (45-106)||(45071247-45071309)
chr1 (51-120)||(12439920-12439988)
chr1 (67-120)||(25517021-25517074)
chr1 (49-97)||(31910706-31910754)
[»] chr6 (19 HSPs)
chr6 (51-120)||(34659352-34659420)
chr6 (37-120)||(15478452-15478536)
chr6 (51-109)||(20396309-20396367)
chr6 (51-101)||(30701958-30702008)
chr6 (37-109)||(20395977-20396050)
chr6 (37-120)||(19470025-19470109)
chr6 (48-106)||(7586877-7586936)
chr6 (32-94)||(11704714-11704777)
chr6 (49-120)||(15586078-15586149)
chr6 (48-106)||(17609027-17609086)
chr6 (51-106)||(20395674-20395729)
chr6 (48-106)||(20635090-20635149)
chr6 (48-106)||(21127600-21127659)
chr6 (45-106)||(12953716-12953778)
chr6 (51-109)||(20395319-20395377)
chr6 (38-79)||(1830091-1830132)
chr6 (48-100)||(17742322-17742375)
chr6 (46-117)||(12347459-12347531)
chr6 (37-100)||(24729246-24729310)
[»] chr8 (16 HSPs)
chr8 (51-164)||(18565355-18565467)
chr8 (45-106)||(40002584-40002646)
chr8 (49-109)||(30213742-30213802)
chr8 (37-106)||(19942586-19942656)
chr8 (45-106)||(23271817-23271879)
chr8 (29-100)||(20311183-20311255)
chr8 (29-100)||(21104820-21104892)
chr8 (48-106)||(23363715-23363774)
chr8 (48-106)||(29378968-29379027)
chr8 (128-170)||(20049770-20049812)
chr8 (86-164)||(20084808-20084884)
chr8 (38-120)||(13644640-13644723)
chr8 (38-120)||(13745065-13745148)
chr8 (45-94)||(22212012-22212061)
chr8 (59-120)||(23433631-23433691)
chr8 (38-106)||(18557402-18557470)
[»] scaffold0103 (1 HSPs)
scaffold0103 (31-120)||(16058-16147)
[»] scaffold0026 (1 HSPs)
scaffold0026 (37-106)||(7284-7353)
[»] scaffold0004 (1 HSPs)
scaffold0004 (38-120)||(382158-382241)
[»] scaffold0177 (1 HSPs)
scaffold0177 (47-106)||(21057-21117)
[»] scaffold1507 (1 HSPs)
scaffold1507 (48-106)||(32-91)
[»] scaffold0771 (1 HSPs)
scaffold0771 (48-106)||(5771-5830)
[»] scaffold0655 (1 HSPs)
scaffold0655 (48-106)||(4485-4544)
[»] scaffold0443 (1 HSPs)
scaffold0443 (48-106)||(1655-1714)
[»] scaffold0050 (1 HSPs)
scaffold0050 (48-106)||(34986-35045)
[»] scaffold1747 (1 HSPs)
scaffold1747 (37-106)||(680-750)
[»] scaffold1745 (1 HSPs)
scaffold1745 (37-106)||(661-731)
[»] scaffold1657 (1 HSPs)
scaffold1657 (40-106)||(1204-1270)
[»] scaffold0570 (1 HSPs)
scaffold0570 (45-106)||(2356-2418)
[»] scaffold0544 (1 HSPs)
scaffold0544 (45-106)||(10405-10467)
[»] scaffold0497 (1 HSPs)
scaffold0497 (48-136)||(10897-10987)
[»] scaffold0163 (1 HSPs)
scaffold0163 (37-106)||(25818-25888)
[»] scaffold0017 (2 HSPs)
scaffold0017 (45-106)||(59540-59602)
scaffold0017 (48-136)||(174937-175027)
[»] scaffold0009 (1 HSPs)
scaffold0009 (41-106)||(268145-268211)
[»] scaffold0530 (1 HSPs)
scaffold0530 (37-106)||(2699-2768)
[»] scaffold0146 (1 HSPs)
scaffold0146 (37-117)||(14476-14557)
[»] scaffold0035 (1 HSPs)
scaffold0035 (37-101)||(20157-20222)
[»] scaffold1551 (1 HSPs)
scaffold1551 (52-120)||(1054-1122)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 5290857 - 5290631
Alignment:
Q  15 atgaaatcaaacacatagagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5290857 atgaaatcaaacacatagagagaagacagaaaacaattatactagttcctcccacaaatcgagagtagtccagtccccttgcacttctaagggatgttca 5290758  T
Q  115 ctataaatctcatatattacaatttgctcaagcacacaagcaagagacttatattgctctcatacaagaaatagacttttatcgctcaatcacacagaaa 214  Q
    ||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5290757 ctataaatctcatatattacaatttgct------------caagagacttatattgctctcatacaagaaatagacttttatcactcaatcacacagaaa 5290670  T
Q  215 agagacgtctccaatctaacttaataaaatcaaatcaaa 253  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  5290669 agagacttctccaatctaacttaatcaaatcaaatcaaa 5290631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 8309914 - 8309810
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcactt-ctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaa 157  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||| |||||||   |||||||||| |||||| ||| ||||||    
T  8309914 gttcctcccacaaaccgagagtagtccaatccccttgcacttccaaagggat-ttcactat-aatctcacgaattacaattttctcaagtacaaaagcaa 8309817  T
Q  158 gagactt 164  Q
    || ||||    
T  8309816 gatactt 8309810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 17879743 - 17879873
Alignment:
Q  33 agagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatatt 132  Q
    ||||| ||||||| | ||||||  | ||||| |||||||||| | |||||| || ||| |||||||||||||| ||| |||||||| ||||| | |||||    
T  17879743 agagacgacacaagaaaattatgttggttccacccacaaaccaacagtagtacaatccacttgcacttctaagagattttcactat-aatcttacatatt 17879841  T
Q  133 acaatttgctcaagcacacaagcaagagactt 164  Q
    |||||||| | || |||||||| |||||||||    
T  17879842 acaatttgtttaaacacacaagtaagagactt 17879873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 29936149 - 29936080
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||| ||||||||||||||| ||||    
T  29936149 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcctgtccccttgcacttccaagg 29936080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 21019387 - 21019472
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattac 134  Q
    |||||||| | |||||| |||||||||||||||||| |||| |||||| ||||| ||||||| || ||||| ||||||| |||||||    
T  21019387 caattatattggttccttccacaaaccgagagtagttcagttcccttgtacttccaagggattttaactat-aatctcacatattac 21019472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 20052750 - 20052835
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaag 146  Q
    |||||||||||||| | ||||||||| ||| ||||||||||||| |||||| |||||||| |||| | || ||||||| |||||||||    
T  20052750 gttcctcccacaaaacaagagtagtctagttcccttgcacttcttagggat-ttcactat-aatcacttagattacaacttgctcaag 20052835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 18418670 - 18418764
Alignment:
Q  44 aaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 136  Q
    ||||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| |||||||  ||||||| | |||||||    
T  18418670 aaaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaataatctcaaagattacaa 18418764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 19141718 - 19141790
Alignment:
Q  48 caattatactagttcctcccacaaa-ccgagagtagtccagtccccttgcacttctaagggatgttcactata 119  Q
    |||||||||| |||||||| ||||| || |||||||||||  || |||||||||| ||||||| |||||||||    
T  19141718 caattatactggttcctcctacaaatccaagagtagtccaaccctcttgcacttccaagggattttcactata 19141790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 20741117 - 20741189
Alignment:
Q  48 caattatactagttcctcccacaaa-ccgagagtagtccagtccccttgcacttctaagggatgttcactata 119  Q
    |||||||||| |||||||| ||||| || |||||||||||  || |||||||||| ||||||| |||||||||    
T  20741117 caattatactggttcctcctacaaatccaagagtagtccaaccctcttgcacttccaagggattttcactata 20741189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 13175355 - 13175296
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  13175355 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 13175296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 4447057 - 4447091
Alignment:
Q  139 tgctcaagcacacaagcaagagacttatattgctc 173  Q
    |||||||||||||||||||||||||| ||||||||    
T  4447057 tgctcaagcacacaagcaagagacttctattgctc 4447091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 11792263 - 11792333
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||  || ||||||||||||| ||||    
T  11792263 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcttgtcccccttgcacttccaagg 11792333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 13681881 - 13681939
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    ||||||| || |||||| ||||||||||  |||||||||| ||||||||||||| ||||    
T  13681881 caattatcctggttccttccacaaaccggaagtagtccagaccccttgcacttcgaagg 13681939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 18440755 - 18440845
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 136  Q
    ||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| |||||||  ||||||| | |||||||    
T  18440755 caattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaataatctcaaagattacaa 18440845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 19143539 - 19143479
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||  | |||||||| |||| |||||||||||| ||||||| ||||||||||    
T  19143539 gttcctcccacaacacaagagtagttcagttcccttgcacttccaagggat-ttcactataa 19143479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 19711814 - 19711745
Alignment:
Q  38 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||| |||||||||| |||||| ||| |||||   ||||||||||| ||||||||||||| ||||    
T  19711814 agacacaaagcaattatactggttccttccataaaccagaagtagtccagtcccccttgcacttccaagg 19711745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 20742938 - 20742878
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||  | |||||||| |||| |||||||||||| ||||||| ||||||||||    
T  20742938 gttcctcccacaacacaagagtagttcagttcccttgcacttccaagggat-ttcactataa 20742878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 39285307 - 39285242
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttc 101  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||| ||| ||||| ||||||    
T  39285307 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcctgtctcccttccacttc 39285242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 1879013 - 1878895
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagg-gatgttcactataaatctcatat-attacaatttgctca 144  Q
    ||||||| || |||||| ||||||  ||  |||||||||| |||| ||||||||| |||| ||| |||||||||| || ||||  |||||||||| ||||    
T  1879013 caattatcctggttccttccacaattcggaagtagtccagccccccttgcacttccaaggagattttcactataa-tcacataagattacaattt-ctca 1878916  T
Q  145 agcacacaagcaagagactta 165  Q
    |||||| ||||||||||||||    
T  1878915 agcacagaagcaagagactta 1878895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 33014177 - 33014060
Alignment:
Q  41 cacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttg 140  Q
    |||||| |||||||| | |||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||||| ||||||||| |||    
T  33014177 cacaaagcaattatattggttcctcccacaaatcgagagtagttcaatccccttgcacttttaaggggttttcactat-aatctcacatattacaaattg 33014079  T
Q  141 ctcaagcacacaagcaaga 159  Q
    |||||||||||| ||||||    
T  33014078 ctcaagcacacaggcaaga 33014060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 24110099 - 24109987
Alignment:
Q  49 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagca 148  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||||||||  |||||| |||| |||  |||||| | ||||||| ||   ||||||    
T  24110099 aattatattggttcctcccacaaaccaagagtagtccagtccccttgcacttcctagggat-ttcattat--atctcaaagattacaaattttgcaagca 24110003  T
Q  149 cacaagcaagagactt 164  Q
    ||||||||||| ||||    
T  24110002 cacaagcaagatactt 24109987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 12060401 - 12060534
Alignment:
Q  60 ttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaaga 159  Q
    ||||| |||||||||||||||||| |||||||||| || ||  ||  ||| |||||||| ||||||| ||||||||| |||||||| |||||||| ||||    
T  12060401 ttccttccacaaaccgagagtagttcagtccccttacattttcaaaagattttcactat-aatctcacatattacaaattgctcaaacacacaagtaaga 12060499  T
Q  160 gacttatattgctc--tcatacaagaaatagactt 192  Q
    | ||| | ||||||  ||| |||||||| ||||||    
T  12060500 ggcttcttttgctcaatcacacaagaaaaagactt 12060534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 28789994 - 28789913
Alignment:
Q  39 gacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||||||||||||||| | ||||||||||| ||  |||||||||| |||||||||||||||| || | || ||||||||||    
T  28789994 gacacaaaacaattatattggttcctcccacgaattgagagtagtcaagtccccttgcacttcaaatgaattttcactataa 28789913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 18702093 - 18702163
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||||||||||||  |||||| ||||||||||| |||||||  || ||||||||||||| ||||    
T  18702093 aagacacaaaacaattatacaggttccttccacaaaccgaaagtagtcatgtcccccttgcacttccaagg 18702163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 38040648 - 38040586
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 106  Q
    ||||||||||||| |||||| ||||||||||  |||||||||||| |||||||||||| ||||    
T  38040648 aaacaattatactggttccttccacaaaccggaagtagtccagtctcccttgcacttccaagg 38040586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 8684997 - 8685057
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||  |  ||||||||||||||||||||||||| ||||||| ||||||||||    
T  8684997 gttcctcccacaacacaggagtagtccagtccccttgcacttccaagggat-ttcactataa 8685057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 25828515 - 25828584
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    |||||||||| |||||||||  |||||| ||||||||||  |||||||| | ||||||||||||| ||||    
T  25828515 aagacacaaaccaattatacaggttccttccacaaaccggaagtagtcctgcccccttgcacttccaagg 25828584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 26655430 - 26655340
Alignment:
Q  31 agagagaagacacaaaacaatt--atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||| ||||||||| |||||  ||||| |||||||||||||  |  |||| |||||||||||||||||||  ||||||| ||||||||||    
T  26655430 agagaggagacacaaagcaattttatactggttcctcccacaacacaggagtggtccagtccccttgcactttcaagggat-ttcactataa 26655340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 23393404 - 23393345
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23393404 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23393345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 24376459 - 24376529
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagg 106  Q
    |||||||||| |||||||||  |||||| ||||||||||  |||||||  |||||| ||||||||||||||    
T  24376459 aagacacaaagcaattatacaggttccttccacaaaccggaagtagtcatgtcccccttgcacttctaagg 24376529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 27766259 - 27766170
Alignment:
Q  31 agagagaagacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||| | |||||| |||||| ||||| |||||||| |||||||   ||||||||||||||||| |||||| |||| || ||||||||||    
T  27766259 agagagcatacacaagacaatttatacttgttcctcctacaaaccagaagtagtccagtccccttacacttccaaggaat-ttcactataa 27766170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 38033489 - 38033427
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 106  Q
    ||||||||||||| |||||| |||||||||   |||||||||||| |||||||||||| ||||    
T  38033489 aaacaattatactggttccttccacaaaccagaagtagtccagtctcccttgcacttccaagg 38033427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 38631106 - 38631144
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccg 75  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  38631106 aagacacaaaacaattatacaagttccttccacaaaccg 38631144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 14794537 - 14794468
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    |||||||||| ||||||| || |||||| | ||||  ||  |||||||||||||||||||||||| ||||    
T  14794537 aagacacaaaccaattatcctggttccttcaacaattcggaagtagtccagtccccttgcacttccaagg 14794468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 21770357 - 21770297
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||   | ||||| ||||||||||||||||||||||| ||| ||||||||||    
T  21770357 gttcctcccacaacatgggagtaatccagtccccttgcacttctaagagat-ttcactataa 21770297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 21822977 - 21823037
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||  |  ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  21822977 gttcctcccacaacacaggagtagtccagtcccattgcacttccaagggat-ttcactataa 21823037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 33240232 - 33240261
Alignment:
Q  138 ttgctcaagcacacaagcaagagacttata 167  Q
    ||||||||||||||||||||||||||||||    
T  33240232 ttgctcaagcacacaagcaagagacttata 33240261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 33248153 - 33248182
Alignment:
Q  138 ttgctcaagcacacaagcaagagacttata 167  Q
    ||||||||||||||||||||||||||||||    
T  33248153 ttgctcaagcacacaagcaagagacttata 33248182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 19498641 - 19498585
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  19498641 ttatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 19498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 19878647 - 19878575
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||| | |||||| | |||| ||  ||||||||||||||||||| | ||| ||||||| ||||||||||    
T  19878647 caattataatggttccttctacaatccaggagtagtccagtccccttgaatttcaaagggattttcactataa 19878575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 23958920 - 23958992
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||| | |||||||  |||| ||  ||||||||||||||||||||||||| ||| ||| |||| |||||    
T  23958920 caattatattggttcctcttacaatccaggagtagtccagtccccttgcacttccaagagattttcattataa 23958992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 8501840 - 8501968
Alignment:
Q  33 agagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctca-tatat 131  Q
    ||||| ||||||| | |||||||||  |||||| ||||||||||||||||||||| ||||||||||||| |||| || || ||||| ||||||| || ||    
T  8501840 agagacgacacaagaaaattatactgattcctctcacaaaccgagagtagtccagaccccttgcacttccaaggaatttttactat-aatctcactagat 8501938  T
Q  132 tacaatttgctcaagcacacaagcaagaga 161  Q
    ||||||||||| || |||| ||| ||||||    
T  8501939 tacaatttgcttaaacacataagtaagaga 8501968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 13978000 - 13977895
Alignment:
Q  57 tagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctc-atatattacaatttgctcaagcacacaagc 155  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||| || |||||||| |||| | | | |||||||  |||||||||||||||||    
T  13978000 tagttcctctcacaaaccgagagtagtctagtccccttgcacttc-aaggaattttcactat-aatcactaaagattacaa-atgctcaagcacacaagc 13977904  T
Q  156 aagagactt 164  Q
    |||||||||    
T  13977903 aagagactt 13977895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 12235717 - 12235829
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctc-atatattacaatttgctcaagcac 149  Q
    ||||||||||||||| |||||||||||||||||| || || |||||||||  |||| || |||| ||| |||| | | ||||||||| ||||||||||||    
T  12235717 ttatactagttcctctcacaaaccgagagtagtctagaccacttgcactttcaaggcattttcattat-aatcactaaatattacaa-ttgctcaagcac 12235814  T
Q  150 acaagcaagagactt 164  Q
    ||||| |||||||||    
T  12235815 acaagaaagagactt 12235829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 43357702 - 43357816
Alignment:
Q  49 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagca 148  Q
    ||||||||||||||||| |||| | ||||||||||||| ||  |||||||||| || | || |||||||| ||||||  | |||||||||| ||||| ||    
T  43357702 aattatactagttcctctcacagatcgagagtagtccaatcaacttgcacttccaaagaattttcactat-aatctcccaaattacaattttctcaaaca 43357800  T
Q  149 cacaagcaagagactt 164  Q
    |||||| || ||||||    
T  43357801 cacaagtaaaagactt 43357816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 19052696 - 19052779
Alignment:
Q  31 agagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||| ||||||||| |||| ||||| |||||||| ||||     ||||||||||||||||||||||||| ||||||| ||||||||||    
T  19052696 agagagcagacacaaatcaatcatactggttcctcctacaa-----gagtagtccagtccccttgcacttccaagggat-ttcactataa 19052779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 244
Target Start/End: Original strand, 46978989 - 46979179
Alignment:
Q  55 actagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaag 154  Q
    ||||||||||  ||||||||||||||||||  ||||| ||| ||||| ||| ||| || ||||||| || |  | ||| ||| | |||||||||||| |     
T  46978989 actagttccttacacaaaccgagagtagtctggtcccattgaacttcaaagagatttttactataa-tcactaagattgcaaat-gctcaagcacacgaa 46979086  T
Q  155 caagagacttatattgctc--tcatacaagaaatagacttttatcgctcaatcaca-cagaaaagagacgtctccaatctaacttaataaaat 244  Q
    ||||| |||| | ||||||  ||| | |||||||||||||||   ||||||||||| | |||||||||| ||| |||||||||||||| ||||    
T  46979087 caagatacttctgttgctcaatcacataagaaatagactttttctgctcaatcacaactgaaaagagacttctacaatctaacttaatcaaat 46979179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 12600112 - 12600167
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc 92  Q
    |||||||||||||||||||| ||||||| ||||||||||  |||||||| ||||||    
T  12600112 aagacacaaaacaattatacaagttccttccacaaaccggaagtagtcctgtcccc 12600167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 19556157 - 19556053
Alignment:
Q  31 agagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatata 130  Q
    |||||| |||||||||  | ||||||| ||||||||||| |||  | |||||||||||||| ||||||||| || | || |||||||| |||||||||||    
T  19556157 agagagcagacacaaacaatttatactggttcctcccac-aacacaaagtagtccagtcccgttgcacttccaatgaat-ttcactat-aatctcatata 19556061  T
Q  131 ttacaatt 138  Q
    ||||||||    
T  19556060 ttacaatt 19556053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 22223525 - 22223440
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatt 138  Q
    ||||||| |||||||||||||  |  |||||||| ||||| |||||||||| ||||||| |||||||| ||||||| |||||||||||    
T  22223525 ttatactggttcctcccacaacacaggagtagtcaagtcctcttgcacttccaagggat-ttcactat-aatctcacatattacaatt 22223440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 3395002 - 3395072
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccc-cttgcacttctaagg 106  Q
    ||||||||||||||||||||  |||||| ||||||||||| |||||||  ||||| |||||||||| ||||    
T  3395002 aagacacaaaacaattatacaggttccttccacaaaccgaaagtagtcatgtccctcttgcacttccaagg 3395072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 6641037 - 6641106
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||||  || ||||||||||||| ||||    
T  6641037 aagacacaaaacaattatacaagttccttccacaaaccga-agtagtcatgtcccccttgcacttccaagg 6641106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 15522191 - 15522014
Alignment:
Q  18 aaatcaaacacatagagagaagacacaaaacaattatactag-ttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcact 116  Q
    |||||||||| | ||||||| |||||| |   |||||||||| |||||| |||||||  ||||||||| ||| ||||||||||| | |||||| ||||||    
T  15522191 aaatcaaacagagagagagatgacacagagagattatactaggttcctctcacaaactaagagtagtctagtacccttgcacttttgagggattttcact 15522092  T
Q  117 ataaatctcatatattacaatttgctcaagcacacaagcaagagacttatattgctc--tcatacaagaaatagactttta 195  Q
    | || | |  |  |||||||  ||||||| |||| |||||||| |||| ||||||||  |||||||||||| | |||||||    
T  15522091 aaaattat--tgaattacaa-atgctcaaacacaaaagcaagaaacttttattgctcaatcatacaagaaagaaactttta 15522014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 31267457 - 31267399
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    ||||||| || |||||| ||||||||||  |||||||||||||||||||||||| ||||    
T  31267457 caattatcctggttccttccacaaaccggaagtagtccagtccccttgcacttccaagg 31267399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 15736190 - 15736259
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||||||||||||| ||||||||||||||||||   || ||||||||||| | | ||| ||||||||||    
T  15736190 ttatactagttcctctcacaaaccgagagtagtcttatcgccttgcacttccatgagattttcactataa 15736259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 22317443 - 22317360
Alignment:
Q  38 agacacaaaacaatt--atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||||  ||||| |||||||| |||| ||  ||||||||||||| | ||||||||| ||||||| ||||||||||    
T  22317443 agacacaaaacaattttatactggttcctcctacaatccaggagtagtccagtctcattgcacttccaagggat-ttcactataa 22317360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 8686202 - 8686154
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtcc 85  Q
    |||||||||||||||||||| ||||||| ||||||||||  ||||||||    
T  8686202 aagacacaaaacaattatacaagttccttccacaaaccggaagtagtcc 8686154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 37986371 - 37986307
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcactt 100  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||| || ||||||||||||    
T  37986371 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcctgtcccccttgcactt 37986307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 14711444 - 14711385
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  14711444 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 14711385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 14779108 - 14779049
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  14779108 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 14779049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 19241613 - 19241672
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtcc-ccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||||| ||||||||||| ||||    
T  19241613 caattatactggttccttccacaaaccggaagtagtccagtcctccttgcacttccaagg 19241672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 36210778 - 36210716
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||||| |||| | ||||||||||  ||||||||||| ||||||||||||| ||||    
T  36210778 aaacaattatactggttcgttccacaaaccggaagtagtccagtcccccttgcacttccaagg 36210716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 39532370 - 39532265
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaatttgct 142  Q
    |||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||  |||| ||| ||||||| ||||| || | |||||||  ||||    
T  39532370 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttacaaggagattttcactaaaaatcacacagattacaa-atgct 39532272  T
Q  143 caagcac 149  Q
    |||||||    
T  39532271 caagcac 39532265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 17994418 - 17994365
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttc 101  Q
    |||||||||| |||||| | ||||||||  ||||||||||||||| ||||||||    
T  17994418 caattatactggttccttctacaaaccggaagtagtccagtccccctgcacttc 17994365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 5718945 - 5718893
Alignment:
Q  49 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttc 101  Q
    ||||||| | |||||||  |||||||||||||||| |||||||||| ||||||    
T  5718945 aattatattggttcctcaaacaaaccgagagtagttcagtcccctttcacttc 5718893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 15366350 - 15366282
Alignment:
Q  52 tatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||| ||||||||| |||| ||  |||||||||||||||||| ||||| |||| ||  ||||||||||    
T  15366350 tataccagttcctcctacaatccaggagtagtccagtccccttccacttataagagagtttcactataa 15366282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 17133350 - 17133390
Alignment:
Q  60 ttcctcccacaaaccgagagtagtccagtccccttgcactt 100  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  17133350 ttcctctcataaaccaagagtagtccagtccccttgcactt 17133390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 33377773 - 33377817
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtcccc 92  Q
    |||||||||| |||||| ||||||||||  |||||||||||||||    
T  33377773 caattatactggttccttccacaaaccggaagtagtccagtcccc 33377817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 22185443 - 22185558
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagc 147  Q
    |||||||||| ||||||  |||||||||||||||||  ||||||||||  |||| ||||||| |||| ||| ||||||| | ||||||||||||||||||    
T  22185443 caattatactggttccttacacaaaccgagagtagtatagtccccttgaccttccaagggatattcattat-aatctcacaaattacaatttgctcaagc 22185541  T
Q  148 acacaagcaagagactt 164  Q
    |||  | ||||||||||    
T  22185542 acatgaacaagagactt 22185558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 26013205 - 26013329
Alignment:
Q  38 agacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaa 136  Q
    ||||||||||||||| ||| | |||||||| |||||||  |||||||||| || ||||||||||  ||||||| |||||||||| ||||||| |||||||    
T  26013205 agacacaaaacaatttatattggttcctcctacaaaccaggagtagtccaatctccttgcactttcaagggat-ttcactataa-tctcatagattacaa 26013302  T
Q  137 tttgctcaagcacacaagcaagagactt 164  Q
     | |||||||||||||| ||||||||||    
T  26013303 at-gctcaagcacacaaacaagagactt 26013329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 17241057 - 17241157
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccc-cttgcacttctaagggatgttcactataa--atctcatatattacaatttgctcaagcacacaagc 155  Q
    |||||||||| ||||||||||||||| |||| | | |||||||| ||||||| ||||||||||  |||||| ||||||||| ||||||||||||||||||    
T  17241057 gttcctcccataaaccgagagtagtctagtctctcatgcacttccaagggat-ttcactataataatctcacatattacaaattgctcaagcacacaagc 17241155  T
Q  156 aa 157  Q
    ||    
T  17241156 aa 17241157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 19903036 - 19903154
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcaca 150  Q
    ||||||||||||||| |||||||||||||||||| ||| |||| ||||||| || |||| |||| |||||| | |  | |||||||  ||||||||||||    
T  19903036 ttatactagttcctctcacaaaccgagagtagtctagt-ccctggcacttcaaaaggattttcaatataaa-cactaagattacaa-atgctcaagcaca 19903132  T
Q  151 caagcaagagacttatattgct 172  Q
    ||||| |||||||| |||||||    
T  19903133 caagcgagagacttctattgct 19903154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 24495248 - 24495190
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||||||  |||||||    
T  24495248 ttatactggttcctcccacaacacaagagtagtccagtccccttgcactttcaagggat 24495190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 9399398 - 9399329
Alignment:
Q  38 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||||||||||| ||||||| ||||||||||  |||||||  || ||||||||||||| ||||    
T  9399398 agacacaaaacaattatacaagttccttccacaaaccggaagtagtcatgtcccccttgcacttccaagg 9399329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 22747802 - 22747862
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||| ||||||||||    
T  22747802 gttcctcccataacacaagagtagtccagtccccttgcacttccaagggat-ttcactataa 22747862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 20215888 - 20215829
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  20215888 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 20215829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 23477741 - 23477800
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtccc-cttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  |||||||||||||| |||||||||| ||||    
T  23477741 caattatactggttccttccacaaaccggaagtagtccagtccctcttgcacttccaagg 23477800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 23487917 - 23487976
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23487917 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23487976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 40033510 - 40033451
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  40033510 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 40033451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 643483 - 643413
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||||||||||||| ||||||| | ||||||||  |||||||  || ||||||||||||| ||||    
T  643483 aagacacaaaacaattatacaagttccttctacaaaccggaagtagtcatgtcccccttgcacttccaagg 643413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 13546304 - 13546234
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||  || ||||||||||||| ||||    
T  13546304 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcatgtcccccttgcacttccaagg 13546234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 135602 - 135723
Alignment:
Q  50 attatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcac 149  Q
    |||||||  ||||||| |||||||| ||| |||| || ||||||| |||||| ||||||| |||||||||| ||||| | |||| || ||||||||||||    
T  135602 attataccggttcctctcacaaaccaagaatagttcaatccccttacacttccaagggat-ttcactataa-tctcaaaaattataaattgctcaagcac 135699  T
Q  150 acaagcaagagacttatattgctc 173  Q
    ||||| | ||||||||||||||||    
T  135700 acaaggaggagacttatattgctc 135723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 61099 - 61158
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  61099 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 61158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 19264087 - 19264293
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaa 136  Q
    |||||||| | |||||||| | |||||||||| |||| | |||||||| || ||||||||||||| ||| ||| || | ||| ||||| | | |||||||    
T  19264087 aagacacatagcaattatattggttcctcccataaactgggagtagtctagcccccttgcacttccaagagat-ttaaatat-aatctgaaagattacaa 19264184  T
Q  137 tttgctcaagcacacaagcaagagacttatattgctc--tcatacaagaaatagacttttatcgctcaatcacacagaaaagagacgtctccaatctaac 234  Q
     |||||||| ||||||||||||||||||    |||||   |||||||| || |||||| |||  ||||||||||||  |||||||| ||| |||||||||    
T  19264185 attgctcaatcacacaagcaagagacttcctatgctcaaccatacaag-aagagacttctatttctcaatcacacaagaaagagacttctacaatctaac 19264283  T
Q  235 ttaataaaat 244  Q
    ||||| ||||    
T  19264284 ttaatcaaat 19264293  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 27685507 - 27685604
Alignment:
Q  67 cacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcata-tattacaatttgctcaagcacacaagcaagagactt 164  Q
    ||||||| |||||||||| ||||| ||||||||||||||| || |||||||| |||| || |  |||||||||||||||| |||||||| |||||||||    
T  27685507 cacaaactgagagtagtctagtcctcttgcacttctaaggaattttcactat-aatcacacaggattacaatttgctcaaacacacaagtaagagactt 27685604  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 4500950 - 4501033
Alignment:
Q  38 agacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||||||||||||| |||||||||| || ||| |||||| ||||||| |||||||||||||||  ||| ||| ||||||||||    
T  4500950 agacacaaaacaatttatactagttcatctcactaaccgatagtagtctagtccccttgcactttcaagagattttcactataa 4501033  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 19905286 - 19905368
Alignment:
Q  38 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||||||||  |||||||| |||| |   ||||||||||||||||||| ||||||||| ||| |||| |||||    
T  19905286 agacacaaaacaattatacaggttcctcctacaatctatgagtagtccagtccccttgtacttctaagtgattttcattataa 19905368  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 16031953 - 16032021
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaag 105  Q
    |||||| ||| |||||||||  |||||| ||||||||||| |||||||  |||||||||||||||||||    
T  16031953 aagacataaatcaattatacaggttccttccacaaaccgaaagtagtcttgtccccttgcacttctaag 16032021  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 11073852 - 11073912
Alignment:
Q  77 gagtagtccagtccccttgcacttctaagggatgttcactataaatctca-tatattacaatt 138  Q
    ||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||    
T  11073852 gagtagtccagtccccttgcacttctaagagat-ttcactat-aatctcactatattacaatt 11073912  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 47596601 - 47596683
Alignment:
Q  18 aaatcaaacacatagagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcactt 100  Q
    |||||| ||||||| | |||  |||||||||||||||| ||||| |||| ||||| ||||||| || ||||| ||||||||||    
T  47596601 aaatcacacacatatatagagaacacaaaacaattatattagtttctcctacaaatcgagagtcgttcagtctccttgcactt 47596683  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 13292301 - 13292237
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    ||||||||||||| |||||||  |||| || |||| |||| |||||||||||||||| |||||||    
T  13292301 aaacaattatactggttcctcaaacaatccaagaggagtctagtccccttgcacttccaagggat 13292237  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 14427773 - 14427701
Alignment:
Q  38 agacacaaaacaa-ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    |||||||| |||| ||||||| |||||||| |||||||  |||||||||||||||||||  |||| |||||||    
T  14427773 agacacaagacaacttatactggttcctcctacaaaccatgagtagtccagtccccttgagcttccaagggat 14427701  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 49989628 - 49989688
Alignment:
Q  47 acaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  49989628 acaattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 49989688  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 4234846 - 4234922
Alignment:
Q  40 acacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactat 118  Q
    ||||||| |||||||||||||| |||  ||||||||| |||||| ||| ||||||||||||  || |||| ||||||||    
T  4234846 acacaaatcaattatactagtttctc--acaaaccgaaagtagttcagcccccttgcactttcaatggattttcactat 4234922  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 13147661 - 13147720
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  13147661 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 13147720  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 13953631 - 13953690
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  13953631 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 13953690  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 15832776 - 15832835
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  15832776 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 15832835  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 31114653 - 31114594
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  31114653 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 31114594  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 10917655 - 10917738
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaat 137  Q
    |||||||||||||||||||||  |  |||||||||||| ||||||| |||| ||||||| |||| ||| ||||||| ||||||||||    
T  10917655 ttatactagttcctcccacaacacaggagtagtccagt-cccttgctcttccaagggat-ttcattat-aatctcacatattacaat 10917738  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 13931353 - 13931423
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagg 106  Q
    ||||||||||||| |||| || |||||| |||||| |||  ||||||||||||||| |||||| |||||||    
T  13931353 aagacacaaaacagttatcctggttccttccacaatccggaagtagtccagtcccctttgcacatctaagg 13931423  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 16201889 - 16201833
Alignment:
Q  77 gagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattaca 135  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||    
T  16201889 gagtaatccagtccccttgcacttccaagggat-ttcactataaat-tcataaattaca 16201833  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 20724445 - 20724515
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||||||||||||   |||||| ||||||||||  |||||||| || ||||||||||||| ||||    
T  20724445 aagacacaaaacaattatataggttccttccacaaaccggaagtagtcctgtcccccttgcacttccaagg 20724515  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 17035195 - 17035123
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagta-gtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||| ||||| ||||||| ||||||| ||||||| ||||| |||||||||||||| ||| ||| ||||||||||    
T  17035195 caataatactggttcctctcacaaactgagagtaagtccaatccccttgcacttcgaagtgat-ttcactataa 17035123  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 17239724 - 17239643
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagggatgttcacta 117  Q
    |||||||||| |||||||||  |||||| ||||||||||  |||||||  |||||| ||||||||| |||| | ||||||||    
T  17239724 aagacacaaagcaattatacaggttccttccacaaaccggaagtagtcttgtcccccttgcacttccaaggaaagttcacta 17239643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 13362906 - 13362970
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    ||||||||||||| |||||||  |||| || |||  |||| |||||||||||||||| |||||||    
T  13362906 aaacaattatactggttcctcatacaatccaagacgagtctagtccccttgcacttccaagggat 13362970  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 21721705 - 21721631
Alignment:
Q  40 acacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttca 114  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||| |||| ||||||||| ||||||| ||||    
T  21721705 acacaaaacaattatactagtttctcccacaaaccaagagtaatccaatcccattgcacttccaagggattttca 21721631  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 16422789 - 16422887
Alignment:
Q  60 ttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaaga 159  Q
    |||||||||||||||| |||| |||| |||||||| |||||| || | || ||||||| || ||||| |||||||||||||||||| |||||||| ||||    
T  16422789 ttcctcccacaaaccgggagttgtcccgtccccttacacttccaaagtattttcactacaa-tctcacatattacaatttgctcaaacacacaagtaaga 16422887  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 30497418 - 30497500
Alignment:
Q  38 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||| ||| |||||||||| |||||||  |||||||||||||||| ||||| |||| |||||| ||| ||| ||||||||||    
T  30497418 agacataaatcaattatactggttcctcttacaaaccgagagtagttcagtctcctttcacttccaagagattttcactataa 30497500  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 9558830 - 9558749
Alignment:
Q  80 tagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaagagactt 164  Q
    ||||||||| ||||||||||| ||||| || |||||||||| ||||||||  ||||| ||||||||||||||||| | |||||||    
T  9558830 tagtccagttcccttgcacttttaaggaattttcactataa-tctcatat--tacaaattgctcaagcacacaagtacgagactt 9558749  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 12397193 - 12397266
Alignment:
Q  31 agagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    |||||| ||||||||| |||| ||||| |||||||| ||||     ||||||||||||||||||||||||| |||||||    
T  12397193 agagagcagacacaaatcaatcatactggttcctcctacaa-----gagtagtccagtccccttgcacttccaagggat 12397266  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 12669883 - 12669815
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||||| |||||||||||||  | | |||||||||||||||||||||||| |||| || ||||||||||    
T  12669883 ttatactggttcctcccacaacacaatagtagtccagtccccttgcacttccaaggaat-ttcactataa 12669815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 14969260 - 14969203
Alignment:
Q  44 aaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttc 101  Q
    |||||||||||||| |||| |||||||||| |||| ||||||||| |||||| |||||    
T  14969260 aaaacaattatactggttcgtcccacaaactgagactagtccagttcccttggacttc 14969203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 19019913 - 19019845
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||||| |||||||||||||  |  |||||||||||||||||||||||| ||||| || ||||||||||    
T  19019913 ttatactggttcctcccacaatacatgagtagtccagtccccttgcacttttaaggaat-ttcactataa 19019845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 28493004 - 28492935
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    |||||||||| |||||||||  |||||| ||||||||||  ||||||||  |||||||||||||| ||||    
T  28493004 aagacacaaagcaattatacaggttccttccacaaaccggaagtagtcctatccccttgcacttccaagg 28492935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 19965911 - 19965857
Alignment:
Q  50 attatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaag 105  Q
    |||||||| |||| || ||||||||||||||||| ||||||| |||||||||||||    
T  19965911 attatactggttc-tctcacaaaccgagagtagttcagtcccgttgcacttctaag 19965857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 21541172 - 21541231
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  21541172 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 21541231  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 22018699 - 22018758
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  22018699 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 22018758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 23926430 - 23926489
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23926430 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 26548970 - 26548911
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  26548970 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 26548911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 2834014 - 2834052
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccg 75  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  2834014 aagacacaaaacaattatacaagttccttccacaaaccg 2834052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 12283779 - 12283849
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||  || ||||||||||||| ||||    
T  12283779 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcatgtcccccttgcacttccaagg 12283849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 18311677 - 18311587
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 136  Q
    ||||||| ||| ||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| |||||||  |||| || |||||||||    
T  18311677 caattatcctaattccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaataatcacacatattacaa 18311587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 22642231 - 22642285
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttc 101  Q
    |||||||||| |||||| ||||||||||  ||||||||||| |||||||||||||    
T  22642231 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttc 22642285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 31587544 - 31587494
Alignment:
Q  50 attatactagttcctcccacaaaccgagagtagtccagtccccttgcactt 100  Q
    ||||||||||||||||| ||||| | ||||||||||| || ||||||||||    
T  31587544 attatactagttcctcctacaaatcaagagtagtccaatctccttgcactt 31587494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 45071309 - 45071247
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  45071309 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 45071247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 12439988 - 12439920
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||||||||||  |  ||||| |||| ||| |||||||||| ||||||| ||||||||||    
T  12439988 ttatactagttcctcccacaattcaggagtactccaatcctcttgcacttccaagggat-ttcactataa 12439920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 25517021 - 25517074
Alignment:
Q  67 cacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||||||||||||| |||| |||||||||| ||| ||| ||| ||||||||||    
T  25517021 cacaaaccgagagtactccaatccccttgcatttcgaagagattttcactataa 25517074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 31910706 - 31910754
Alignment:
Q  49 aattatactagttcctcccacaaaccgagagtagtccagtccccttgca 97  Q
    |||||||| |||||||||||||   | ||||||||||||||||||||||    
T  31910706 aattataccagttcctcccacattacaagagtagtccagtccccttgca 31910754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 34659352 - 34659420
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||||| |||||||||||||  | |||||||||||||||||||| ||||||||||||| ||||||||||    
T  34659352 ttatactggttcctcccacaacacaagagtagtccagtccccttgtacttctaagggat-ttcactataa 34659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 15478536 - 15478452
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg-gatgttcactataa 120  Q
    ||||||||||||||||||  | |||||| |||||| |||  |||||||||||||||||||||||| |||| ||| ||||||||||    
T  15478536 aagacacaaaacaattatcttggttccttccacaatccggaagtagtccagtccccttgcacttccaaggagattttcactataa 15478452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 20396309 - 20396367
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    |||||||||||||||| ||||| || |||||||||||| |||||||||||| |||||||    
T  20396309 ttatactagttcctcctacaaaacgggagtagtccagtacccttgcacttccaagggat 20396367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 30702008 - 30701958
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttc 101  Q
    ||||||| ||||||||||||||||||||||| | || ||||||||||||||    
T  30702008 ttatactggttcctcccacaaaccgagagtatttcaatccccttgcacttc 30701958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 20395977 - 20396050
Alignment:
Q  37 aagacacaaaaca-attatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    |||| |||||||| || |||||||||||||| | ||| |||||| |||| |||||||||||||||| |||||||    
T  20395977 aagaaacaaaacatatcatactagttcctcctagaaaacgagaggagtcgagtccccttgcacttccaagggat 20396050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 19470025 - 19470109
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagggatgttcactataa 120  Q
    ||||||||||| |||||||| ||||||| ||||||||||  |||||||  || ||||| ||||||||||||   |||||||||||    
T  19470025 aagacacaaaaaaattatacaagttccttccacaaaccggaagtagtcatgtccccctagcacttctaaggagagttcactataa 19470109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 7586936 - 7586877
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  7586936 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 7586877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 11704714 - 11704777
Alignment:
Q  32 gagagaagacacaaaacaa-ttatactagttcctcccacaaaccgagagtagtccagtcccctt 94  Q
    ||||||||||||||||||| ||||||  |||||||| ||||| |  ||||||||||||||||||    
T  11704714 gagagaagacacaaaacaatttatacccgttcctcctacaaatcaggagtagtccagtcccctt 11704777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 15586078 - 15586149
Alignment:
Q  49 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||| ||||||||||||||| || |||||||||||   ||||| ||| || |||| ||||||||||    
T  15586078 aattatactaattcctcccacaaaccaagtgtagtccagtcttgttgcatttcaaaaggattttcactataa 15586149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 17609086 - 17609027
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  |||||||||||| |||||||||||| ||||    
T  17609086 caattatactggttccttccacaaaccggaagtagtccagtctcccttgcacttccaagg 17609027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 20395674 - 20395729
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    ||||||| |||||||| | ||| || ||||||||||||||||||||||||| ||||    
T  20395674 ttatactggttcctcctagaaaacgggagtagtccagtccccttgcacttccaagg 20395729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 20635090 - 20635149
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  20635090 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 20635149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 21127600 - 21127659
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  21127600 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 21127659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 12953778 - 12953716
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  12953778 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 12953716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 20395319 - 20395377
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    ||||||| ||| |||| | ||| || |||||||||||||| ||||||||||||||||||    
T  20395319 ttatactggtttctcctagaaaacgggagtagtccagtcctcttgcacttctaagggat 20395377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 1830132 - 1830091
Alignment:
Q  38 agacacaaaacaattatactagttcctcccacaaaccgagag 79  Q
    ||||||||| |||||||| | |||||||||||||||||||||    
T  1830132 agacacaaatcaattatattggttcctcccacaaaccgagag 1830091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 17742375 - 17742322
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcactt 100  Q
    ||||||| ||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  17742375 caattatcctagttccttccacaaaccggaagtagtccagtcccccttgcactt 17742322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 12347459 - 12347531
Alignment:
Q  46 aacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagggatgttcacta 117  Q
    |||||||||||  |||||| ||||||||||  |||||||| |||||| ||||||||| |||| | ||||||||    
T  12347459 aacaattatacaggttccttccacaaaccggaagtagtcctgtccccattgcacttccaaggaaagttcacta 12347531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 24729310 - 24729246
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcactt 100  Q
    |||||||||||||||||||| ||||||| |||||| |||  |||||||  || ||||||||||||    
T  24729310 aagacacaaaacaattatacaagttccttccacaatccggaagtagtcttgtcccccttgcactt 24729246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 18565355 - 18565467
Alignment:
Q  51 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctc-atatattacaatttgctcaagcac 149  Q
    |||||||||||||||||||||  | |||||||||||||||||||||| ||| || |||| |||||||| |||| | ||  ||||||| ||||||||| ||    
T  18565355 ttatactagttcctcccacaacacaagagtagtccagtccccttgcatttccaatggat-ttcactat-aatcactatggattacaacttgctcaaggac 18565452  T
Q  150 acaagcaagagactt 164  Q
    || | ||||||||||    
T  18565453 actaccaagagactt 18565467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 40002584 - 40002646
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||||||||    
T  40002584 aaacaattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttctaagg 40002646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 30213742 - 30213802
Alignment:
Q  49 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 109  Q
    ||||||||  ||||||| |||||  |||||||||||||||||||||||||||| |||||||    
T  30213742 aattatacatgttcctctcacaattcgagagtagtccagtccccttgcacttccaagggat 30213802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 19942586 - 19942656
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||||||  |||||| ||||||||||| |||||||| || ||||||||||||| ||||    
T  19942586 aagacacaaagcaattatacaggttccttccacaaaccgaaagtagtcctgtcccccttgcacttccaagg 19942656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 23271879 - 23271817
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||| |||||||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23271879 aaacaattaaactagttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23271817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 20311183 - 20311255
Alignment:
Q  29 atagagagaagacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcactt 100  Q
    ||||| |||||||||| ||||||| ||||||||||| |  ||||| ||||||||||  |||||||||||||||    
T  20311183 atagatagaagacacataacaatttatactagttccccttacaaatcgagagtagtatagtccccttgcactt 20311255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 21104820 - 21104892
Alignment:
Q  29 atagagagaagacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcactt 100  Q
    ||||| |||||||||| ||||||| ||||||||||| |  ||||| ||||||||||  |||||||||||||||    
T  21104820 atagatagaagacacataacaatttatactagttccccttacaaatcgagagtagtatagtccccttgcactt 21104892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 23363715 - 23363774
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||| ||||||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23363715 caattatcctagttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23363774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 29378968 - 29379027
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  29378968 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 29379027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 20049812 - 20049770
Alignment:
Q  128 atattacaatttgctcaagcacacaagcaagagacttatattg 170  Q
    |||||||||||||||||| |||||||| |||||||||| ||||    
T  20049812 atattacaatttgctcaaacacacaagtaagagacttacattg 20049770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 20084808 - 20084884
Alignment:
Q  86 agtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaagagactt 164  Q
    ||||||||||||| |||||| ||  || ||||||| ||||| ||||||||||| | |||| ||||||||||||||||||    
T  20084808 agtccccttgcacatctaagagagttttactataa-tctcaaatattacaatt-gttcaatcacacaagcaagagactt 20084884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 13644640 - 13644723
Alignment:
Q  38 agacacaaaacaatt--atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||| |||||||||  ||||| |||||||||||||  |  |||||||||||||| |||||||||  ||||||| ||||||||||    
T  13644640 agacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggat-ttcactataa 13644723  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 13745065 - 13745148
Alignment:
Q  38 agacacaaaacaatt--atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||| |||||||||  ||||| |||||||||||||  |  |||||||||||||| |||||||||  ||||||| ||||||||||    
T  13745065 agacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggat-ttcactataa 13745148  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 22212061 - 22212012
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagtcccctt 94  Q
    |||||||||| || |||||| ||||||||||  |||||||||||||||||    
T  22212061 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccctt 22212012  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 23433691 - 23433631
Alignment:
Q  59 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||||||||||  |  |||||||||||| |||||||||||| ||||||| ||||||||||    
T  23433691 gttcctcccacaacacaggagtagtccagttcccttgcacttccaagggat-ttcactataa 23433631  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 18557402 - 18557470
Alignment:
Q  38 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    ||||||||| |||||||| | ||| || |||||| |||  ||||||||| |||||||||||||| ||||    
T  18557402 agacacaaagcaattatagtggtttcttccacaatccggaagtagtccactccccttgcacttccaagg 18557470  T

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Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 16058 - 16147
Alignment:
Q  31 agagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    |||||| |||||||||  ||||||||  ||| |||| |||| || ||||||||| || ||||||||||||| ||| ||| ||||||||||    
T  16058 agagagcagacacaaagtaattatacaggtttctcctacaatccaagagtagtcaagcccccttgcacttcaaagtgattttcactataa 16147  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 7284 - 7353
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    |||||||| | |||||||||  |||||| ||||||||||| ||||||||  |||||||||||||| ||||    
T  7284 aagacacatagcaattatacaggttccttccacaaaccgaaagtagtcctatccccttgcacttccaagg 7353  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 382158 - 382241
Alignment:
Q  38 agacacaaaacaat--tatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||||||||||||  ||||||||||||| ||||||  |  |||||||||| |||||||||| ||||||| ||| ||||||||||    
T  382158 agacacaaaacaatcatatactagttccttccacaacacaggagtagtccactccccttgcagttctaagagat-ttcactataa 382241  T

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Target: scaffold0177 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 21117 - 21057
Alignment:
Q  47 acaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    ||||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  21117 acaattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 21057  T

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Target: scaffold1507 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1507
Description:

Target: scaffold1507; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 91 - 32
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  91 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 32  T

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Target: scaffold0771 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 5771 - 5830
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  5771 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 5830  T

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Target: scaffold0655 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 4485 - 4544
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  4485 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 4544  T

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Target: scaffold0443 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 1714 - 1655
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  1714 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 1655  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 34986 - 35045
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccag-tccccttgcacttctaagg 106  Q
    |||||||||| |||||| ||||||||||| |||||||||| | |||||||||||| ||||    
T  34986 caattatactggttccttccacaaaccgaaagtagtccagtttcccttgcacttccaagg 35045  T

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Target: scaffold1747 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1747
Description:

Target: scaffold1747; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 680 - 750
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtcc-agtccccttgcacttctaagg 106  Q
    ||||||||||||||||||||  |||| | ||||||||||| |||||||| |  ||||||||||||| ||||    
T  680 aagacacaaaacaattatacaggttctttccacaaaccgaaagtagtcctatcccccttgcacttccaagg 750  T

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Target: scaffold1745 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1745
Description:

Target: scaffold1745; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 731 - 661
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtcc-agtccccttgcacttctaagg 106  Q
    ||||||||||||||||||||  |||| | ||||||||||| |||||||| |  ||||||||||||| ||||    
T  731 aagacacaaaacaattatacaggttctttccacaaaccgaaagtagtcctatcccccttgcacttccaagg 661  T

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Target: scaffold1657 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 1204 - 1270
Alignment:
Q  40 acacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    ||||||| ||||||||| ||||||| ||||||||||  |||||||   |||||||||||||| ||||    
T  1204 acacaaagcaattatacaagttccttccacaaaccggaagtagtcatatccccttgcacttccaagg 1270  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 2418 - 2356
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 106  Q
    ||||||||||||| |||||| ||||||| ||  |||||||||||| |||||||||||| ||||    
T  2418 aaacaattatactggttccttccacaaatcggaagtagtccagtctcccttgcacttccaagg 2356  T

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Target: scaffold0544 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 10467 - 10405
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 106  Q
    |||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  10467 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 10405  T

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Target: scaffold0497 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 10987 - 10897
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 136  Q
    ||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| |||||||  ||||||| | |||||||    
T  10987 caattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaataatctcaaagattacaa 10897  T

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Target: scaffold0163 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 25818 - 25888
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagt-agtccagtccccttgcacttctaagg 106  Q
    |||||||||| |||||||||  |||||| ||||||||||  ||| ||||| ||||||||||||||| ||||    
T  25818 aagacacaaagcaattatacaggttccttccacaaaccggaagtcagtcctgtccccttgcacttccaagg 25888  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 59602 - 59540
Alignment:
Q  45 aaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 106  Q
    ||||||||||||| |||||| |||||||||   |||||||||||| |||||||||||| ||||    
T  59602 aaacaattatactggttccttccacaaaccagaagtagtccagtctcccttgcacttccaagg 59540  T

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Target: scaffold0017; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 174937 - 175027
Alignment:
Q  48 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 136  Q
    ||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| ||||||| ||||| || | |||||||    
T  174937 caattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaaaaatcacacagattacaa 175027  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 268145 - 268211
Alignment:
Q  41 cacaaaacaattatactagttcctcccacaaaccgagagtagtcc-agtccccttgcacttctaagg 106  Q
    ||||||||||||||||  |||||| ||||||||||  |||||||| | |||||||||||||| ||||    
T  268145 cacaaaacaattatacaggttccttccacaaaccggaagtagtcctattccccttgcacttccaagg 268211  T

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Target: scaffold0530 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 2768 - 2699
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 106  Q
    |||||||||| ||||||||   |||||| ||||||||||  |||||||| || |||||||||||| ||||    
T  2768 aagacacaaagcaattatataggttccttccacaaaccggaagtagtcctgtgcccttgcacttccaagg 2699  T

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Target: scaffold0146 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 14476 - 14557
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagggatgttcacta 117  Q
    |||||||||| |||||||||  |||||| ||||||||||  |||||||  |||||| ||||||||| |||| | ||||||||    
T  14476 aagacacaaagcaattatacaggttccttccacaaaccggaagtagtcttgtcccccttgcacttccaaggaaagttcacta 14557  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 20222 - 20157
Alignment:
Q  37 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttc 101  Q
    |||| |||||||||||||||  |||||| ||||||||||  |||||||| || |||||||||||||    
T  20222 aagatacaaaacaattatacaggttccttccacaaaccggaagtagtcctgtcccccttgcacttc 20157  T

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Target: scaffold1551 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 1122 - 1054
Alignment:
Q  52 tatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 120  Q
    ||||| ||||||||| |||| ||  |||||||||||||||||| ||||| |||| ||  ||||||||||    
T  1122 tataccagttcctcctacaatccaggagtagtccagtccccttccacttataagagagtttcactataa 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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