View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_19 (Length: 424)
Name: NF10092A_low_19
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 41786296 - 41786026
Alignment:
| Q |
13 |
aatcaaaaattgaaaggggtaaagtaagaaaaacaataatagaatgaatcatttttcaattttacaaaacttaggagtattggtttccaatgactccatc |
112 |
Q |
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| T |
41786296 |
aatcaaaaattgaaaggggtaaagtaagaaaaacaataatagaatgaatcatttttcaattttacaaaacttaggagtattggtttccaatgactccatc |
41786197 |
T |
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| Q |
113 |
tccatgtacaataataagcagaaaaaagaaagttcatgtcttcttattaactctcatacttgcgaccaaattcattagatagttacaccggtcgcgatga |
212 |
Q |
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| T |
41786196 |
tccatgtacaataataagcagaaaaaagaaagttcatgtcttcttattaactctcatacttgtgaccaaattcattagatagttacaccggtcgcgatga |
41786097 |
T |
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| Q |
213 |
aactcaacaaccaaacaaagctgtcttattgcttccctcttcttctccccaaggctatccaaatcctcatc |
283 |
Q |
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| T |
41786096 |
aactcaacaaccaaacaaagctgtcttattgcttccctcttcttctccccaaggctatccaaatcctcatc |
41786026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 326 - 403
Target Start/End: Complemental strand, 41785983 - 41785906
Alignment:
| Q |
326 |
aagctggctcactgcatttgtcaagttcaatttctctcctccttctttgctcactgtggcttctaaattccatacttt |
403 |
Q |
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| T |
41785983 |
aagctggctcactgcatttgtcaagttcaatttctctcctccttctttgctcactgtggcttctaaattccatacttt |
41785906 |
T |
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