View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_204 (Length: 249)
Name: NF10092A_low_204
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_204 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 5898630 - 5898397
Alignment:
| Q |
8 |
gagaagaagaaccagagctgcttatatcaggagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattctt |
107 |
Q |
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| T |
5898630 |
gagaagaagaaccagagctgcttagatcagaagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattctt |
5898531 |
T |
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| Q |
108 |
atggtcatagttctaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaa |
207 |
Q |
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| T |
5898530 |
atggtcatagttccaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaa |
5898431 |
T |
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| Q |
208 |
ggaaaagctaaaatgatttttgtgattgtagata |
241 |
Q |
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| T |
5898430 |
ggaaaagctaaaatgatttttgtgattgtagata |
5898397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 5860446 - 5860218
Alignment:
| Q |
12 |
agaagaaccagagctgcttatatcaggagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattcttatgg |
111 |
Q |
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| T |
5860446 |
agaagaaccagagctgcttagatcaggagaattgttaatgagggagtttgaagaatgacacaggccgacttgctacagttgctgcaacagattcttatgg |
5860347 |
T |
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| Q |
112 |
tcatagttctaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaaggaa |
211 |
Q |
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| T |
5860346 |
tcatagctccaacgaatgtagctatccttgatttaggatgttaacaccattcattttttccttaacctttgaaccagtttggtcaatgatcatcaaggaa |
5860247 |
T |
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| Q |
212 |
aagctaaaatgatttttgtgattgtagata |
241 |
Q |
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| T |
5860246 |
aagctaaaatga-ttttgtgattgtagata |
5860218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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