View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_205 (Length: 249)
Name: NF10092A_low_205
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_205 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 26099449 - 26099226
Alignment:
| Q |
15 |
ggagcctcagtcaagattccgaagatacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcaactcacacaatcatcacccttcttc |
114 |
Q |
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| T |
26099449 |
ggagcctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcccctcacacaatcatcacccttcttc |
26099350 |
T |
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| Q |
115 |
attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgt |
214 |
Q |
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| T |
26099349 |
attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgt |
26099250 |
T |
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| Q |
215 |
aacggaaggccatggccatgaaca |
238 |
Q |
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| T |
26099249 |
aatggatggccatggccacgaaca |
26099226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
| Q |
24 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
73 |
Q |
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| T |
25224814 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25224863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
| Q |
24 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
73 |
Q |
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| T |
25288970 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25289019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 25224928 - 25225016
Alignment:
| Q |
129 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
217 |
Q |
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| T |
25224928 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25225016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 25289084 - 25289172
Alignment:
| Q |
129 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
217 |
Q |
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| T |
25289084 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25289172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 25728320 - 25728232
Alignment:
| Q |
129 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
217 |
Q |
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| T |
25728320 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25728232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
| Q |
24 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
73 |
Q |
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| T |
25728434 |
gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca |
25728385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 25222655 - 25222582
Alignment:
| Q |
138 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc |
211 |
Q |
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| T |
25222655 |
tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc |
25222582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 25286811 - 25286738
Alignment:
| Q |
138 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc |
211 |
Q |
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| T |
25286811 |
tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc |
25286738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 25618044 - 25618132
Alignment:
| Q |
129 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
217 |
Q |
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|||||| | ||||||||||| |||| |||||||||| ||||||| || | |||||||| || |||||||| ||||||||||||||||| |
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| T |
25618044 |
tccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac |
25618132 |
T |
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