View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_206 (Length: 249)
Name: NF10092A_low_206
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_206 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 4398614 - 4398735
Alignment:
| Q |
113 |
aatctaccactgcctataggtatgggcgcatgcatggtaatatggtataaacaaaaaagcataaataatattnnnnnnnntgcagtagtaataataatat |
212 |
Q |
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| T |
4398614 |
aatctaccactacctataggtatgggc--atgcatggtaatatggtataaacaaaaaagcataaataatatt-aaaaaaatgtagtagtaataataatat |
4398710 |
T |
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| Q |
213 |
taatatcattaaagtaatccatatt |
237 |
Q |
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| T |
4398711 |
taatatcattaaagtaatccatatt |
4398735 |
T |
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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4398447 - 4398528
Alignment:
| Q |
1 |
tgcattaaaatcacaatctccagcctttctgaaaagccatgcatattttctatatgctctccaccaaaacctatagtaaatacg |
84 |
Q |
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| T |
4398447 |
tgcattaaaatcacaatctccatcctttctgaaaagccatgcatattttctatatg--ctccaccaaaaccaatagtaaatacg |
4398528 |
T |
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