View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_209 (Length: 249)
Name: NF10092A_low_209
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_209 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 31102306 - 31102084
Alignment:
| Q |
19 |
cttgtgagattcatgttaggcaaatcctaaattcgagtaatacacaaagagtgagattagagaaattcacctttgaaatggttttccttcctgttgatgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31102306 |
cttgtgagattcatgttaggcaaatcctaaattcgagtaaaacacaaagagtgagattagagaaattcacctttgaaatcgttttccttcctgttgatgg |
31102207 |
T |
|
| Q |
119 |
taaaaacttttctgccttccacgctgtttggaatgagcgttaacttaggagaaattattaggagacaaacaaagaatataaaacacttttgggtgaacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31102206 |
taaaaacttttctgccttccacgctgtttggaatgagcgttaacttaggagaaattattaggagacaaacaaagaatataaaacacttttgggtgaacat |
31102107 |
T |
|
| Q |
219 |
tttcatgataagtgacaacacca |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31102106 |
tttcatgataagtgacaacacca |
31102084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University