View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_210 (Length: 248)
Name: NF10092A_low_210
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_210 |
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Alignment Details
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 1956777 - 1956853
Alignment:
| Q |
6 |
cagagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaaa |
82 |
Q |
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| T |
1956777 |
cagagaagaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatctaggtaaaaa |
1956853 |
T |
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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 1941686 - 1941761
Alignment:
| Q |
6 |
cagagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaa |
81 |
Q |
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| T |
1941686 |
cagagaagaagataaagggttttgcaattagtgagacagcttttttaatcttccttctcatggcatctaggtaaaa |
1941761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 1927576 - 1927701
Alignment:
| Q |
6 |
cagagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaaaat-actaaaacttgttttgtttt |
104 |
Q |
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| T |
1927576 |
cagagaagaagataaagggttttgcaataagtgaaacagcttttacaatatttcttctcatggcatctaggtaaaaaataaattacaattattttatttt |
1927675 |
T |
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| Q |
105 |
atttatgtttataccttcataatatt |
130 |
Q |
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| T |
1927676 |
attgatgtttttaccttcataatatt |
1927701 |
T |
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