View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_212 (Length: 248)
Name: NF10092A_low_212
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_212 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 53985024 - 53984798
Alignment:
| Q |
17 |
gaagttgattctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta |
116 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53985024 |
gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta |
53984925 |
T |
|
| Q |
117 |
atttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53984924 |
atttggtaaatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa |
53984825 |
T |
|
| Q |
217 |
atattccgacgtgcatttcatctcagt |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
53984824 |
atattccgacgtgcatttcatctcagt |
53984798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 53971308 - 53971094
Alignment:
| Q |
27 |
ctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaaga-tatgataaggataatttgacgatttaatttaatttggtag |
125 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||| | | | |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
53971308 |
ctagacgtgctctaacatagtccgaaacttcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaatttggtaa |
53971209 |
T |
|
| Q |
126 |
atctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatattccga |
225 |
Q |
| |
|
|| ||||||| ||| |||||| | | |||||| ||||||| |||| || ||| |||||||||||||||||| |||||| | ||||||||| |||||| |
|
|
| T |
53971208 |
atatacctct--acatgtcttactaccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaaaatgttccga |
53971111 |
T |
|
| Q |
226 |
cgtgcatttcatctcag |
242 |
Q |
| |
|
| || |||||||||||| |
|
|
| T |
53971110 |
catgtatttcatctcag |
53971094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 19935380 - 19935421
Alignment:
| Q |
40 |
aacatagtcccaaacttcaacatcttaccattcatcaggttt |
81 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19935380 |
aacattgtcccaaacttcaaaatcttaccattcatcaggttt |
19935421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 19966519 - 19966560
Alignment:
| Q |
40 |
aacatagtcccaaacttcaacatcttaccattcatcaggttt |
81 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19966519 |
aacattgtcccaaacttcaaaatcttaccattcatcaggttt |
19966560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 31014482 - 31014529
Alignment:
| Q |
34 |
tgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt |
81 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
31014482 |
tgcttcaacacagtcccaagcttcaacatcttatcattcataaggttt |
31014529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 34036311 - 34036358
Alignment:
| Q |
34 |
tgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt |
81 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
34036311 |
tgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt |
34036358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 6688110 - 6688157
Alignment:
| Q |
34 |
tgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt |
81 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
6688110 |
tgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt |
6688157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 16164051 - 16163998
Alignment:
| Q |
27 |
ctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtt |
80 |
Q |
| |
|
||||| ||||||||||| || ||||| ||| |||||||| |||||||||||||| |
|
|
| T |
16164051 |
ctagaagtgcttcaacagaggcccaagcttgaacatcttgccattcatcaggtt |
16163998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University