View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_215 (Length: 247)
Name: NF10092A_low_215
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_215 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31506898 - 31506658
Alignment:
| Q |
1 |
atcagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagg |
100 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506898 |
atcagagatcttatttatgaatgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagg |
31506799 |
T |
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| Q |
101 |
gtcactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506798 |
gtcactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtc |
31506699 |
T |
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| Q |
201 |
ccagttggaaatactattgtccttagagctagagcaatgtc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506698 |
ccagttggaaatactattgtccttagagctagagcaatgtc |
31506658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34495861 - 34496101
Alignment:
| Q |
1 |
atcagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34495861 |
atcagagatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagg |
34495960 |
T |
|
| Q |
101 |
gtcactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34495961 |
gtcactgtcggcaacaataccagcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtc |
34496060 |
T |
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| Q |
201 |
ccagttggaaatactattgtccttagagctagagcaatgtc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
34496061 |
ccagttggaaatactattgtccttagagctagagcaatgtc |
34496101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 27607408 - 27607648
Alignment:
| Q |
1 |
atcagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27607408 |
atcagagatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagg |
27607507 |
T |
|
| Q |
101 |
gtcactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtc |
200 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27607508 |
gtcactgtcggcaacaatacctgcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtc |
27607607 |
T |
|
| Q |
201 |
ccagttggaaatactattgtccttagagctagagcaatgtc |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
27607608 |
ccagttggaaatactattgtccttagagctagagctatgtc |
27607648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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