View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_222 (Length: 246)

Name: NF10092A_low_222
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_222
NF10092A_low_222
[»] chr8 (3 HSPs)
chr8 (1-231)||(9510468-9510699)
chr8 (24-179)||(6244844-6244999)
chr8 (25-228)||(25900730-25900934)
[»] chr4 (3 HSPs)
chr4 (28-231)||(27299865-27300068)
chr4 (25-223)||(43516975-43517174)
chr4 (24-231)||(20543780-20543988)
[»] chr1 (6 HSPs)
chr1 (1-213)||(5808428-5808641)
chr1 (25-231)||(26510594-26510800)
chr1 (24-231)||(33150690-33150898)
chr1 (25-221)||(13868062-13868259)
chr1 (64-171)||(1248884-1248991)
chr1 (25-151)||(45795127-45795253)
[»] chr3 (4 HSPs)
chr3 (25-231)||(34829115-34829322)
chr3 (25-221)||(40513953-40514150)
chr3 (25-130)||(20857652-20857757)
chr3 (42-130)||(20857941-20858029)
[»] chr7 (2 HSPs)
chr7 (25-221)||(35213329-35213526)
chr7 (93-231)||(26855477-26855616)
[»] chr2 (4 HSPs)
chr2 (24-231)||(11196046-11196254)
chr2 (93-231)||(144261-144400)
chr2 (24-231)||(32624054-32624257)
chr2 (65-185)||(7300413-7300533)
[»] chr5 (4 HSPs)
chr5 (99-231)||(21368155-21368288)
chr5 (28-175)||(979381-979528)
chr5 (93-166)||(5099940-5100013)
chr5 (74-185)||(34369540-34369651)
[»] chr6 (1 HSPs)
chr6 (93-231)||(14687245-14687384)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 9510468 - 9510699
Alignment:
Q  1 aagagtgaaactttacnnnnnnngctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaag 100  Q
    ||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||| |    
T  9510468 aagagtgaaactttactttttctgctagttgttcaatggtggtttggatattgttatgaaatttgttgttacgttcgttcgaaaccaaccagacacaatg 9510567  T
Q  101 taatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatta-gggggtcaacacct 199  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9510568 taaccaaataagttgaaggaaggattgacgagcctttgagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatattaggggggtcaacacct 9510667  T
Q  200 gatattccgatccaacacctgatatgatgcca 231  Q
    | ||||||||||||||||||||||||||||||    
T  9510668 ggtattccgatccaacacctgatatgatgcca 9510699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 6244844 - 6244999
Alignment:
Q  24 gctagctgttcaatggtggtttggatattgttat-gaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaag 122  Q
    ||||| ||||| |||||||||||||||||||||| ||||| ||||||||| ||||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  6244844 gctagttgttcgatggtggtttggatattgttattgaaatctgttgttacgttcatac-aaaccaaccagacacaaagtaaccaaataagttgaaggaag 6244942  T
Q  123 gattgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgcta 179  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6244943 gattgacgagcctttaagtgacctgtagagtgagtaaactgaatgaaatggtcgcta 6244999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 25900730 - 25900934
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    |||| ||||||||| ||| ||||||||| ||||||| | ||||||||| ||||||| ||| ||||||| |||||||||| || ||||||||||| || ||    
T  25900730 ctagttgttcaatgttggattggatattattatgaagtctgttgttacgttcattccaaaccaaccaggcacaaagtaaccatataagttgaagaaatga 25900829  T
Q  125 ttgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctgata 223  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||   |||||| | ||||||||||||||| |||||||||||| |||| |||    
T  25900830 ttgacgagccttcaagtgacctgtagagtgagtaaactgaatgaaatggtcatcaatattaaaggggtcaacacctgacattccgatccaagacctaata 25900929  T
Q  224 tgatg 228  Q
    |||||    
T  25900930 tgatg 25900934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 27299865 - 27300068
Alignment:
Q  28 gctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaaggattg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| || |||||||||||||||||||||||    
T  27299865 gctgttcaatggtggtttggatattgttatgaaatatgttgttacattcgttccaaaccaaccagacacaaag-aaccaaataagttgaaggaaggattg 27299963  T
Q  128 acgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatta-gggggtcaacacctgatattccgatccaacacctgatatga 226  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |    
T  27299964 acgagcctttaagtgacctgtagagtgagtaaattgaatgaaatggtcgctaatattaggggggtcaacacctggtattccgatccaacatctgatataa 27300063  T
Q  227 tgcca 231  Q
    |||||    
T  27300064 tgcca 27300068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 43517174 - 43516975
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    ||||| |||| ||||| ||||||||||| |||| || | | || |||| ||||||| ||| |||||| ||||||||||| ||||||||||||||||||||    
T  43517174 ctagccgttccatggttgtttggatattattataaagtctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttgaaggaagga 43517075  T
Q  125 ttgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctgata 223  Q
    |||||||||| || |||||| |||||| ||||| |||| ||||||||||||   |||||| ||||| ||| ||||||| ||||| |||||||||||||||    
T  43517074 ttgacgagcccttgagtgacctgtagaatgagtgaactaaatgaaatggtcatcaatattaaggggatcagcacctgacattccaatccaacacctgata 43516975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 20543780 - 20543988
Alignment:
Q  24 gctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagg 123  Q
    ||||| |||||||  |||||||||||||| |||  || | | || |||| ||||||| ||| || ||| ||||||||||| |||||||||||||| || |    
T  20543780 gctagttgttcaaccgtggtttggatattattaaaaagtctattattacgttcattccaaaccacccaaacacaaagtaaccaaataagttgaagaaatg 20543879  T
Q  124 attgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctgat 222  Q
      |||||||||||| |||||| ||||||||||||||||||||||||||||||   |||||| | ||||||| ||||||| |||||||||||| |||||||    
T  20543880 gctgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcatcaatattaaaggggtcagcacctgacattccgatccaagacctgat 20543979  T
Q  223 atgatgcca 231  Q
    | |||||||    
T  20543980 aagatgcca 20543988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 5808428 - 5808641
Alignment:
Q  1 aagagtgaaactttacnnnnnnngctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaag 100  Q
    ||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||| ||| |||||||||||||||    
T  5808428 aagagtgaaactttactttttctgctagctgttcgatggtggtttggatattgttatgaaatttgttgttacgttcgttccaaaccaaccagacacaaag 5808527  T
Q  101 taatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatattagggg-gtcaacacct 199  Q
    ||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  5808528 taaccaaataagttgaaggaaggattgacgagcctttgagtgacatgtcgagtgagtaaactgaatgaaatggtcgctaatattaggggagtcaacacat 5808627  T
Q  200 gatattccgatcca 213  Q
    | ||||||||||||    
T  5808628 ggtattccgatcca 5808641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 26510800 - 26510594
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    |||| ||||||||| ||||||||||||| ||||||| | ||||||||| ||||||| | |  |||||| |||||||||| || |||||||||| |||| |    
T  26510800 ctagttgttcaatgttggtttggatattattatgaagtctgttgttacgttcattccacacaaaccaggcacaaagtaaccatataagttgaa-gaagaa 26510702  T
Q  125 ttgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctgata 223  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||||    ||||| | ||||||||||||||| |||||||||||| ||||||||    
T  26510701 ttgacgagccttcgagtgacctgtagagtgagtaaactgaatgaaatggtcatcgatattaaaggggtcaacacctgacattccgatccaagacctgata 26510602  T
Q  224 tgatgcca 231  Q
    ||||||||    
T  26510601 tgatgcca 26510594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 33150690 - 33150898
Alignment:
Q  24 gctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagg 123  Q
    ||||| ||||||| |||||||||||| || ||||  | | | || |||| ||||||| ||| |||||| ||||||||||| ||||||||||| || || |    
T  33150690 gctagttgttcaacggtggtttggatgttattatagagtctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatg 33150789  T
Q  124 attgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctgat 222  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||||||||||   |||||| ||||||||  ||||||| |||||||||||| |||||||    
T  33150790 attgacgagcttttgagtgacctgtagagtgagtaaactgaatgaaatggtcatcaatattaagggggtcggcacctgacattccgatccaagacctgat 33150889  T
Q  223 atgatgcca 231  Q
    | |||||||    
T  33150890 aagatgcca 33150898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 13868259 - 13868062
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    |||| ||||| ||||| ||||||||||| |||| || | | || |||| ||||||| ||| |||||| ||||| ||||| ||||||||||| ||||||||    
T  13868259 ctagttgttccatggttgtttggatattattataaagtctattattacgttcattccaaaccaaccaaacacatagtaaccaaataagttgtaggaagga 13868160  T
Q  125 ttgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctga 221  Q
    |||||| |||    |||||| |||||| ||||| |||||||||||||||||   |||||| ||||| ||| ||||||| ||||| |||||||||||||    
T  13868159 ttgacgggcccgggagtgacctgtagaatgagtgaactgaatgaaatggtcatcaatattaaggggatcagcacctgacattccaatccaacacctga 13868062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 1248991 - 1248884
Alignment:
Q  64 tgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactg 163  Q
    ||||||| | ||||||| |||||| ||| ||||||||||| |||||||||||||| |||||| |||  |||||  |||||| |||| ||||| |||||||    
T  1248991 tgttgttgcgttcattccaaatcatccacacacaaagtaaccaaataagttgaagaaaggatcgacacgccttcgagtgacctgtatagtgaataaactg 1248892  T
Q  164 aatgaaat 171  Q
    ||| ||||    
T  1248891 aataaaat 1248884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 45795127 - 45795253
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    |||||| ||| ||||| |||| |||||| |||| || | | || |||| | ||||| ||| |||||| ||||| ||||| ||||||||||| | ||||||    
T  45795127 ctagctcttccatggttgttttgatattattataaagtctattattacgtacattccaaaccaaccaaacacatagtaaccaaataagttgtacgaagga 45795226  T
Q  125 ttgacgagcctttaagtgacttgtaga 151  Q
    |||||| |||  | |||||| ||||||    
T  45795227 ttgacgggcccgtgagtgacctgtaga 45795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 34829115 - 34829322
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    |||| ||||||||| ||||||||||||| ||||||| | ||||||||||||||||| ||| |||| || ||||||||||  | ||||||||||| |||||    
T  34829115 ctagttgttcaatgttggtttggatattattatgaagtctgttgttacattcattccaaaccaacaaggcacaaagtaactatataagttgaagaaagga 34829214  T
Q  125 ttgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctgata 223  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||||   |||||| | ||||| ||||||||| |||||||||||| ||||||||    
T  34829215 ttgacgagccttcgagtgacctgtagagtgagtaaactgaatgaaatggtcatcaatattaaaggggttaacacctgacattccgatccaagacctgata 34829314  T
Q  224 tgatgcca 231  Q
    ||||||||    
T  34829315 tgatgcca 34829322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 40514150 - 40513953
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    |||| ||||| ||||||||||||||||| ||||  | | | || |||| ||||||| ||| |||||| ||||| ||||| ||||||||||| || |||||    
T  40514150 ctagttgttccatggtggtttggatattattatagagtctattattacgttcattccaaaccaaccaaacacatagtaaccaaataagttgtagaaagga 40514051  T
Q  125 ttgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctga 221  Q
    |||||| |||  | |||||| | |||| ||||  |||||||||||||| ||   |||||| ||||| ||| ||| ||| ||||| |||||||||||||    
T  40514050 ttgacgggcccgtgagtgacctatagaatgagcgaactgaatgaaatgttcatcaatattaaggggatcagcacatgacattccaatccaacacctga 40513953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 20857652 - 20857757
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    |||| ||||| ||||| ||||||||||| |||| || | | || |||| ||||||| ||| |||||||||||| ||||| ||||||||||| ||||||||    
T  20857652 ctagttgttccatggttgtttggatattattataaagtctattattacgttcattccaaaccaaccagacacatagtaaccaaataagttgtaggaagga 20857751  T
Q  125 ttgacg 130  Q
    ||||||    
T  20857752 ttgacg 20857757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 20857941 - 20858029
Alignment:
Q  42 gtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaaggattgacg 130  Q
    ||||||||||| |||| || | | || |||| ||||||| ||| |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20857941 gtttggatattattataaagtctattattacgttcattccaaaccaaccagacacatagtaaccaaataagttgtaggaaggattgacg 20858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 35213329 - 35213526
Alignment:
Q  25 ctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagga 124  Q
    |||||||||| ||||| |||||||||||  ||| || ||| || |||| ||||||| ||| |||||| ||||| ||||| ||||||||||| ||||||||    
T  35213329 ctagctgttccatggttgtttggatattagtataaagtatattattacgttcattccaaaccaaccaaacacagagtaaccaaataagttgtaggaagga 35213428  T
Q  125 ttgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctga 221  Q
    ||||||||||  | |||||| |||||| ||||| |||||||||||||||||   |||||| ||||| ||||||||||| ||||| |||||||||||||    
T  35213429 ttgacgagcccgtgagtgacctgtagaatgagtgaactgaatgaaatggtcatcaatattaaggggatcaacacctgacattccaatccaacacctga 35213526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 26855477 - 26855616
Alignment:
Q  93 acacaaagtaatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggt 191  Q
    ||||||||||| |||||||||||||| || || |||||||||||| |||||| |||||||||| |||||||||||||||||||  ||||||| |  ||||    
T  26855477 acacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacctgtagagtgaataaactgaatgaaatggtcattaatattaaaagggt 26855576  T
Q  192 caacacctgatattccgatccaacacctgatatgatgcca 231  Q
    || ||||||| ||||||||| || |||||||| |||||||    
T  26855577 cagcacctgacattccgatcaaagacctgataagatgcca 26855616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 11196046 - 11196254
Alignment:
Q  24 gctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagg 123  Q
    ||||| ||||||| |||||||||||| || |||| ||  || || |||| ||||||| ||| |||||| | | ||||||| ||||||||||| || ||      
T  11196046 gctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattccaaaccaaccaaataaaaagtaaccaaataagttggagaaatt 11196145  T
Q  124 attgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacacctgatattccgatccaacacctgat 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||   |||||| ||| |||| |||||||| |||| ||||||| |||||||    
T  11196146 attgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcatcaatattaaggaggtcgacacctgacattctgatccaagacctgat 11196245  T
Q  223 atgatgcca 231  Q
    | |||||||    
T  11196246 aagatgcca 11196254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 144400 - 144261
Alignment:
Q  93 acacaaagtaatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaata-ttagggggt 191  Q
    ||||||||||| |||||||||||||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| | |  ||||    
T  144400 acacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacttgtagagtgagtaaactgaatgaaatggtcattaatagtaaaagggt 144301  T
Q  192 caacacctgatattccgatccaacacctgatatgatgcca 231  Q
    || ||||||| |||||||||||| |||||||| |||||||    
T  144300 cagcacctgacattccgatccaagacctgataagatgcca 144261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 32624054 - 32624257
Alignment:
Q  24 gctagctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaagg 123  Q
    ||||| |||||||  |||||||||||||| |||  || | | || |||| ||| ||| ||| || ||| ||||||||||| |||||||||||||| || |    
T  32624054 gctagttgttcaaccgtggtttggatattattaaaaagtctattattacgttcgttccaaaccacccaaacacaaagtaaccaaataagttgaagaaatg 32624153  T
Q  124 attgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatattagggggtcaacacctgatattccgatccaacacctgata 223  Q
    | |||||||||||| |||||| ||||||||||||||||||||||||||||||   ||||     |||||| ||||||| ||||| |||||| ||||||||    
T  32624154 actgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcatcaata----agggtcagcacctgacattccaatccaagacctgata 32624249  T
Q  224 tgatgcca 231  Q
     |||||||    
T  32624250 agatgcca 32624257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 7300413 - 7300533
Alignment:
Q  65 gttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactga 164  Q
    |||||| ||||||||| ||| || ||||||||||||||  |||||||| ||||| || ||| |||| | | | || ||||  ||| ||||||||||||||    
T  7300413 gttgttgcattcattccaaaccatccagacacaaagtagccaaataagctgaagaaaagatcgacgcgtcatcaaatgaccagtatagtgagtaaactga 7300512  T
Q  165 atgaaatggtcgctaatatta 185  Q
    |||||||| || | |||||||    
T  7300513 atgaaatgctcacaaatatta 7300533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 21368288 - 21368155
Alignment:
Q  99 agtaatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatatt-agggggtcaacac 197  Q
    ||||| ||||||||||||||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||   |||||| || |||||| |||    
T  21368288 agtaaccaaataagttgaaggaatgactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcatcaatattaagagggtcagcac 21368189  T
Q  198 ctgatattccgatccaacacctgatatgatgcca 231  Q
    |||| |||||||||||| |||||||| |||||||    
T  21368188 ctgacattccgatccaagacctgataagatgcca 21368155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 979528 - 979381
Alignment:
Q  28 gctgttcaatggtggtttggatattgttatgaaatatgttgttacattcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaaggattg 127  Q
    ||||||| ||||| ||||| ||||| |||| || | | || |||| ||||||| |||||| ||| || ||||||||  |||||||||||||||| |||||    
T  979528 gctgttccatggttgtttgaatattattataaagtctattattacgttcattccaaatcagccaaacgcaaagtaactaaataagttgaaggaatgattg 979429  T
Q  128 acgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtc 175  Q
     |||||| || |||||| |||||| ||||| |||||||||||||||||    
T  979428 tcgagcccttgagtgacctgtagaatgagtgaactgaatgaaatggtc 979381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 5100013 - 5099940
Alignment:
Q  93 acacaaagtaatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactgaat 166  Q
    ||||||||||| |||||||||||||| || || |||||||||||| |||||| |||||||||| ||||||||||    
T  5100013 acacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacctgtagagtgaataaactgaat 5099940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 34369651 - 34369540
Alignment:
Q  74 ttcattcgaaatcaaccagacacaaagtaatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatgg 173  Q
    ||||||| |||  ||||| |||||||||||||||||||| || |||||||||   || |||||  |||||| |||| || |||||||||| | |||||      
T  34369651 ttcattccaaacgaaccaaacacaaagtaatcaaataagctggaggaaggatcttcgtgccttagagtgacctgtatagcgagtaaactgcaagaaattt 34369552  T
Q  174 tcgctaatatta 185  Q
    || |||||||||    
T  34369551 tcactaatatta 34369540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 14687384 - 14687245
Alignment:
Q  93 acacaaagtaatcaaataagttgaaggaaggattgacgagcctttaagtgacttgtagagtgagtaaactgaatgaaatggtcgctaata-ttagggggt 191  Q
    ||||||||||| |||||||||||||| || || |||||||||||| |||||| |||||||||| ||||||||||||||||| |   |||| | |  ||||    
T  14687384 acacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacctgtagagtgaataaactgaatgaaatgggcctcaatagtaaaagggt 14687285  T
Q  192 caacacctgatattccgatccaacacctgatatgatgcca 231  Q
    || ||||||| |||||||||||| |||||||| |||||||    
T  14687284 cagcacctgacattccgatccaagacctgataagatgcca 14687245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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