View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_225 (Length: 245)
Name: NF10092A_low_225
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_225 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 38567284 - 38567070
Alignment:
| Q |
18 |
ggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagataggtgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaata |
117 |
Q |
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| T |
38567284 |
ggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaata |
38567185 |
T |
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| Q |
118 |
gagttgaaagaagtttatttcagctatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattgg |
217 |
Q |
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| T |
38567184 |
gagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattgg |
38567085 |
T |
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| Q |
218 |
ttggacaaagtggaa |
232 |
Q |
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| T |
38567084 |
ttggacaaagtggaa |
38567070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 38526162 - 38525945
Alignment:
| Q |
15 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagataggtgcttatgatccaaatggaaaaatattagaggatattcaaggtgaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526162 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgag |
38526063 |
T |
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| Q |
115 |
atagagttgaaagaagtttatttcagctatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcat |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||| |
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| T |
38526062 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcat |
38525963 |
T |
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| Q |
215 |
tggttggacaaagtggaa |
232 |
Q |
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| T |
38525962 |
tggttggacaaagtggaa |
38525945 |
T |
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