View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_227 (Length: 245)

Name: NF10092A_low_227
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_227
NF10092A_low_227
[»] chr5 (5 HSPs)
chr5 (65-184)||(32268817-32268936)
chr5 (73-208)||(41900181-41900316)
chr5 (152-224)||(32268755-32268825)
chr5 (66-133)||(41886279-41886346)
chr5 (151-200)||(12846943-12846992)
[»] chr7 (3 HSPs)
chr7 (140-207)||(15091347-15091414)
chr7 (142-204)||(10168806-10168868)
chr7 (142-204)||(10176331-10176393)
[»] chr4 (18 HSPs)
chr4 (146-207)||(2460597-2460658)
chr4 (128-201)||(2367656-2367729)
chr4 (146-195)||(2547544-2547593)
chr4 (149-201)||(2381378-2381430)
chr4 (147-207)||(6007665-6007725)
chr4 (143-201)||(566629-566687)
chr4 (148-201)||(2525763-2525816)
chr4 (150-195)||(12124836-12124881)
chr4 (150-195)||(12126892-12126937)
chr4 (142-207)||(55907434-55907499)
chr4 (149-201)||(2486313-2486365)
chr4 (149-201)||(5035628-5035680)
chr4 (161-207)||(1547469-1547515)
chr4 (143-193)||(2376228-2376278)
chr4 (149-187)||(2380123-2380161)
chr4 (146-195)||(2472104-2472153)
chr4 (140-180)||(8445271-8445311)
chr4 (160-200)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (140-207)||(513426-513493)
chr3 (142-193)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (141-201)||(14821628-14821688)
chr6 (149-201)||(6395781-6395833)
chr6 (149-197)||(6427432-6427480)
chr6 (161-195)||(6437161-6437195)
chr6 (159-201)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (142-201)||(32152212-32152271)
chr8 (149-195)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (142-207)||(1036176-1036241)
chr2 (142-195)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (152-201)||(15837967-15838016)
chr1 (142-201)||(33161439-33161498)
chr1 (149-193)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 32268936 - 32268817
Alignment:
Q  65 tcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtctacaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 164  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268936 tcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 32268837  T
Q  165 ccaaacagttactctccatc 184  Q
    ||||||||||||||||||||    
T  32268836 ccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 41900181 - 41900316
Alignment:
Q  73 ttctggttcatatctaccagatgagtgttgggaatgtgtctacaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacag 172  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||||| | ||||  | |||||||||||||||  ||||||||||||||    
T  41900181 ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaatctctctcactcgtctccaaacag 41900280  T
Q  173 ttactctccatcaccaaccgtcttcgattatctctt 208  Q
    || |||||||||||||||  ||||||||| ||||||    
T  41900281 tttctctccatcaccaacactcttcgattctctctt 41900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 32268825 - 32268755
Alignment:
Q  152 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagcctatgatcc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||| |||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat--tctctctcacagtctatgatcc 32268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 41886279 - 41886346
Alignment:
Q  66 caatgatttctggttcatatctaccagatgagtgttgggaatgtgtctacaaattcttgaaagacaac 133  Q
    ||||||||  |||||  ||| |||| |||||||||||||||||||||| ||||||| |||||||||||    
T  41886279 caatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  151 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 200  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  140 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 207  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  142 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 204  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  142 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 204  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  146 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 207  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  128 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  146 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 195  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  149 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  147 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 207  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  143 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  148 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  150 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 195  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  150 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 195  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  142 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 207  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  149 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  149 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  161 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 207  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  143 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 193  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  149 tctctctccatcgtctccaaacagttactctccatcacc 187  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  146 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 195  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  140 tgcttgaaatctctctccatcgtctccaaacagttactctc 180  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  160 cgtctccaaacagttactctccatcaccaaccgtcttcgat 200  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  140 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 207  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  142 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 193  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  141 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  149 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  149 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 197  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  161 gtctccaaacagttactctccatcaccaaccgtct 195  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  159 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  142 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  149 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 195  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  142 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 207  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  142 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 195  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  152 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  142 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 201  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  149 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 193  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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