View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_23 (Length: 417)

Name: NF10092A_low_23
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_23
NF10092A_low_23
[»] chr6 (3 HSPs)
chr6 (18-411)||(663602-664000)
chr6 (22-250)||(908100-908328)
chr6 (204-248)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (292-355)||(44172881-44172944)
chr7 (285-359)||(36314611-36314685)
chr7 (309-375)||(38134414-38134480)
chr7 (201-249)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (198-249)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (298-371)||(16315862-16315935)
chr5 (298-346)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (292-360)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (298-360)||(18513238-18513300)
chr4 (319-368)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (309-374)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (292-369)||(43328458-43328535)
chr1 (198-246)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 663602 - 664000
Alignment:
Q  18 gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663602 gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat 663701  T
Q  118 aaaaactgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa 217  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663702 aaaaattgttcatatatataatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa 663801  T
Q  218 tttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacact-----aacacaacactaacac 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  663802 tttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacactaacacaacacaacactaacac 663901  T
Q  313 atgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaatta 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663902 atgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaatta 664000  T

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Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 908328 - 908100
Alignment:
Q  22 tcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccataaaa 121  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  908328 tcaaaaactgcattattatgcaaactccattcacaaattctcgctttctctggtatcaaaagaggcaaaatttcacataagtaaatcataaaccataaaa 908229  T
Q  122 actgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaatttc 221  Q
      ||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||| ||||||||||||| |||||| | |    
T  908228 tttgttgatatatataatctttgtagcaccaacactacttatcaaaggtgtgccaagtgtccgatacatgtaagtgtctaacaccgacaaatgtaagtac 908129  T
Q  222 attgaaatatgtctttttctcaaattata 250  Q
    ||||||||||| || ||||||||||||||    
T  908128 attgaaatatgactatttctcaaattata 908100  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  204 accgacacatgtaatttcattgaaatatgtctttttctcaaatta 248  Q
    |||||||||||| ||| ||||||| |||||| |||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 44172881 - 44172944
Alignment:
Q  292 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatca 355  Q
    |||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||||| ||||    
T  44172881 acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 36314611 - 36314685
Alignment:
Q  285 gtgtctaacactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgt 359  Q
    ||||| ||||| || ||||||| ||||||| || ||||||||||||||| ||| |||||||||||| || |||||    
T  36314611 gtgtccaacaccaagacaacaccaacacatatgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 38134414 - 38134480
Alignment:
Q  309 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtcc 375  Q
    |||||| || |||||||||| |||| ||| |||||||||||| ||| ||||||||||||| ||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtcc 38134480  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 36314628 - 36314676
Alignment:
Q  201 aacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 249  Q
    |||||| |||||| | ||| |||||||||||||| ||||||||||||||    
T  36314628 aacaccaacacatatgattacattgaaatatgtcattttctcaaattat 36314676  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 44605137 - 44605188
Alignment:
Q  198 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 249  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  44605137 tctaacaccgacacatgtaattacattgaattatgttattttctcaaattat 44605188  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 16315935 - 16315862
Alignment:
Q  298 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaat 371  Q
    |||||||||  | ||||||||||||||| || |||  ||| | |||||||||| ||||||||||||||||||||    
T  16315935 acacaacacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtcaacatgtcaat 16315862  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 19625928 - 19625976
Alignment:
Q  298 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaa 346  Q
    |||||||||| ||||||||||||||||| || ||| |||| ||||||||    
T  19625928 acacaacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 8039274 - 8039206
Alignment:
Q  292 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 360  Q
    ||||| |||||||||  |||| | || ||||||||||  ||||||| ||||||||||||||||||||||    
T  8039274 acactgacacaacaccgacacctatgattacattgaatcatgccattttctcaaattatcatcagtgtc 8039206  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 18513238 - 18513300
Alignment:
Q  298 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 360  Q
    |||||||||| |||||| || |||||||||| |||| ||| |||||||||||| ||| |||||    
T  18513238 acacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 5654609 - 5654658
Alignment:
Q  319 ttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtc 368  Q
    |||||||||| |||| ||| |||||||||||| ||||||||| |||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 6501546 - 6501481
Alignment:
Q  309 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtc 374  Q
    ||||||||||||||||| || |||  |||  ||||||||||| | |||||||||| ||||||||||    
T  6501546 acacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgtcaatgtc 6501481  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 43328535 - 43328458
Alignment:
Q  292 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtca 369  Q
    |||| ||||| ||| | ||||||||||||||||| || |||  ||| |||||||||||| || ||||||||| |||||    
T  43328535 acaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtca 43328458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 40158408 - 40158456
Alignment:
Q  198 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaat 246  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||||||    
T  40158408 tctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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