View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_230 (Length: 244)
Name: NF10092A_low_230
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_230 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 19190111 - 19190333
Alignment:
| Q |
22 |
cctccggtgttcctaccggacgaaaaaatggttattctggtggtgggtttggtggaaatggtggttattatggaaataaggataataagtatcatgagag |
121 |
Q |
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| T |
19190111 |
cctccggtgttcctaccggacgaaaaaagggttattctggtggtgggtttggtggaaatggtggttattatggaaataaggataataagtatcatgagag |
19190210 |
T |
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| Q |
122 |
tggttatggacgttatggtggtggtactacaggtggtggttacggtcttgataaccgatctaacagtggttatggaggtggacgttctggtggagctact |
221 |
Q |
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| T |
19190211 |
tggttatggacgttatggtggtggtactacaggtggtggttacggtcttgataaccgatctaacagtggttatggaggtggacgttctggtggagctact |
19190310 |
T |
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| Q |
222 |
gggggtggttatggttctaatgg |
244 |
Q |
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| T |
19190311 |
ggtggtggttatggttctaatgg |
19190333 |
T |
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