View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_231 (Length: 244)

Name: NF10092A_low_231
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_231
NF10092A_low_231
[»] chr1 (4 HSPs)
chr1 (29-224)||(7386418-7386613)
chr1 (65-201)||(19991215-19991350)
chr1 (118-202)||(19322649-19322733)
chr1 (29-59)||(19322751-19322781)
[»] chr5 (3 HSPs)
chr5 (29-225)||(4925203-4925404)
chr5 (65-225)||(35205787-35205947)
chr5 (84-225)||(35211203-35211344)
[»] chr3 (3 HSPs)
chr3 (65-223)||(52314493-52314651)
chr3 (65-221)||(53464903-53465059)
chr3 (100-197)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (68-224)||(23563558-23563714)
chr4 (96-224)||(48265287-48265415)
[»] chr2 (2 HSPs)
chr2 (130-226)||(39375508-39375604)
chr2 (33-71)||(39375627-39375665)
[»] chr8 (1 HSPs)
chr8 (109-226)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (102-223)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 7386418 - 7386613
Alignment:
Q  29 atactattaattaaaagaaataaaactcaaagtattacaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaact 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  7386418 atactattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaact 7386517  T
Q  129 actcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 224  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  7386518 actcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctcttag 7386613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 19991350 - 19991215
Alignment:
Q  65 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 164  Q
    |||||||| ||||||| | |||||||||| |||||||| ||||  ||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  19991350 acaaaatc-aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatga 19991252  T
Q  165 cacgagagcattggttagtgtgataccacccatatgg 201  Q
    ||| | ||||||||  |||||||||||||||||||||    
T  19991251 cacaaaagcattgggcagtgtgataccacccatatgg 19991215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  118 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 202  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 19322781 - 19322751
Alignment:
Q  29 atactattaattaaaagaaataaaactcaaa 59  Q
    |||||||||||||||||||||||||||||||    
T  19322781 atactattaattaaaagaaataaaactcaaa 19322751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 4925203 - 4925404
Alignment:
Q  29 atactattaattaaaagaaataaaactcaaagtatt-----------acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgt 117  Q
    ||||||||||||||||||||||| ||||||||||||           | ||||||||||||||||      |||||||||||||||||||| ||||||||    
T  4925203 atactattaattaaaagaaataatactcaaagtattctaaaatatgtataaaatctaacaattac------aggaacgtagtaatgcattgttaccatgt 4925296  T
Q  118 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatg 217  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4925297 atagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggacagacgatgcgtatg 4925396  T
Q  218 ctcttagt 225  Q
    ||||||||    
T  4925397 ctcttagt 4925404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 35205787 - 35205947
Alignment:
Q  65 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 164  Q
    ||||||||  |||||| | |||||||||| | ||||||||||| || ||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||    
T  35205787 acaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatga 35205886  T
Q  165 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagt 225  Q
    ||| | |||||||| || ||||||||||||||||||  ||| ||||||| |||||||||||    
T  35205887 cacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctcttagt 35205947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 35211344 - 35211203
Alignment:
Q  84 ggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 183  Q
    |||||||||| | ||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  184 gtgataccacccatatggacagacgatgtgtatgctcttagt 225  Q
    |||||||||||||||||  |||  |||||| |||||||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctcttagt 35211203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 52314493 - 52314651
Alignment:
Q  65 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 164  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  52314493 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 52314592  T
Q  165 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctctta 223  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||||    
T  52314593 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctta 52314651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 53464903 - 53465059
Alignment:
Q  65 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 164  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  53464903 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 53465002  T
Q  165 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 221  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  53465003 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 1995809 - 1995906
Alignment:
Q  100 aatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccat 197  Q
    ||||||||||||| |||  | ||||| |||||||  ||||| |||||||||| | ||||||||||| | || ||||| || |||||  ||||||||||    
T  1995809 aatgcattgctactatggttggtttagctactcatatccaatgccaattatccaagatattatgactcaagtgcattagtcagtgtattaccacccat 1995906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 23563558 - 23563714
Alignment:
Q  68 aaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacac 167  Q
    |||||| |||||| | |||||||||| ||||||||||||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  23563558 aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 23563657  T
Q  168 gagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 224  Q
     | ||||||||  |||||||||||||||||||   ||| ||||||| ||||||||||    
T  23563658 aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctcttag 23563714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 48265287 - 48265415
Alignment:
Q  96 tagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 195  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  196 atatggacagacgatgtgtatgctcttag 224  Q
    |||||  ||| ||||||| ||| ||||||    
T  48265387 atatgtgcaggcgatgtgcatgttcttag 48265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 39375604 - 39375508
Alignment:
Q  130 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagtg 226  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctcttagtg 39375508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 39375665 - 39375627
Alignment:
Q  33 tattaattaaaagaaataaaactcaaagtattacaaaat 71  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  39375665 tattaattaaaagaaataaaacttaaagtattacaaaat 39375627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 40278604 - 40278487
Alignment:
Q  109 ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 208  Q
    |||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  209 atgtgtatgctcttagtg 226  Q
    ||||||||||||| ||||    
T  40278504 atgtgtatgctctaagtg 40278487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 45888823 - 45888944
Alignment:
Q  102 tgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgg 201  Q
    |||||||| || ||| ||| |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | |    
T  45888823 tgcattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttg 45888922  T
Q  202 acagacgatgtgtatgctctta 223  Q
    || |||||||||||||||||||    
T  45888923 accgacgatgtgtatgctctta 45888944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University