View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_237 (Length: 243)
Name: NF10092A_low_237
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_237 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5290569 - 5290352
Alignment:
| Q |
1 |
acagggtcaagtatggacaaagcagccagccagccattatatttatatatattattggtacccgacgtttatattgaatataaaataaaatttgcatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5290569 |
acagggtcaagtatggacaaagcagccagccagccattatat------atattattggtacccgacgtttatattgaatataaaataaaatttgcatgat |
5290476 |
T |
|
| Q |
101 |
gttaagggttttagtcaaacacgtgatgttatgttcagctaccctccaatatgcacactactctcttcatataaaaaccatctcatcccaaacatttctg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5290475 |
gttaagagttttagtcaaacacgtgatgttatgttcagctaccctccaatatgcacactactctcttcatataaaaaccatctcatcccaaacatttctg |
5290376 |
T |
|
| Q |
201 |
caccacaacacacttcaacccttt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5290375 |
caccacaacacacttcaacccttt |
5290352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5301746 - 5301963
Alignment:
| Q |
1 |
acagggtcaagta-tggacaaagcagccagccagccattatatttatatatattattggtacccgacgtttatattgaatataaaataaaatttgcatga |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5301746 |
acagggtcaagtaatggacaaagcagccagccagccagcca--ttatatgtattattggtacccgacgtttatattgaatataaaataaaatttgcatga |
5301843 |
T |
|
| Q |
100 |
tgttaagggttttagtcaaacacgtgatgttatgttcagctaccctccaatatgcacactactctcttcatataaaaaccatctcatcccaaacatttct |
199 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5301844 |
tgttaagagttttagtcaaacacatg-----atgttcagctaccctccaatatgcacactactctcttcatataaaaaccatctcatcccaaacatttct |
5301938 |
T |
|
| Q |
200 |
gcaccacaacacacttcaacccttt |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5301939 |
gcaccacaacacacttcaacccttt |
5301963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 5283668 - 5283778
Alignment:
| Q |
114 |
gtcaaacacgtgatgttatgttcagctaccctccaatatgcacactactctcttcatataaaaaccatctcatcccaaacatttctgcaccacaacacac |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || | ||||||||||||| | |
|
|
| T |
5283668 |
gtcaaacacgtgatattatgttcagctaccctccaatatgcactctactctcttcatataaaaaccatctcaccccaaatatctttgcaccacaacactc |
5283767 |
T |
|
| Q |
214 |
ttcaacccttt |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
5283768 |
ttcaacccttt |
5283778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 5309488 - 5309610
Alignment:
| Q |
94 |
gcatgatgttaagggttttagtcaaacacgtgatgttatgttcagctaccctccaatatgcacactactctcttcatataaaaaccatctcatcccaaac |
193 |
Q |
| |
|
|||| ||||||| |||| |||||||||||||||||| ||||||||||| ||| |||| |||||||| ||||||||| || | ||| | ||||| |
|
|
| T |
5309488 |
gcataatgttaaaagtttgagtcaaacacgtgatgtt-----cagctaccctctaat--gcactctactctcaacatataaaa-ccttatcaccacaaac |
5309579 |
T |
|
| Q |
194 |
atttctgcaccacaacacacttcaacccttt |
224 |
Q |
| |
|
|| | ||||||||||||| |||||||||||| |
|
|
| T |
5309580 |
atatttgcaccacaacactcttcaacccttt |
5309610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 5314358 - 5314403
Alignment:
| Q |
167 |
tcatataaaaaccatctcatcccaaacatttctgcaccacaacacac |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
5314358 |
tcatataaaaaccatctca-cccaaacatctttgcaccacaacacac |
5314403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University