View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_243 (Length: 242)

Name: NF10092A_low_243
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_243
NF10092A_low_243
[»] chr8 (10 HSPs)
chr8 (37-236)||(61451-61650)
chr8 (40-236)||(1365829-1366025)
chr8 (37-167)||(39255673-39255803)
chr8 (39-167)||(44751607-44751735)
chr8 (101-155)||(26492093-26492147)
chr8 (40-93)||(62235-62288)
chr8 (130-167)||(12351828-12351865)
chr8 (40-80)||(39254787-39254827)
chr8 (39-81)||(41859309-41859351)
chr8 (40-80)||(44752578-44752618)
[»] chr4 (18 HSPs)
chr4 (39-236)||(47198604-47198801)
chr4 (40-236)||(28683508-28683703)
chr4 (39-167)||(55159988-55160115)
chr4 (40-88)||(25371545-25371593)
chr4 (38-80)||(28684240-28684282)
chr4 (100-166)||(43737653-43737719)
chr4 (42-81)||(3848585-3848624)
chr4 (46-81)||(55159186-55159221)
chr4 (40-81)||(36865724-36865765)
chr4 (47-88)||(37275095-37275136)
chr4 (40-88)||(38694954-38695002)
chr4 (38-93)||(47199390-47199445)
chr4 (39-81)||(11417686-11417728)
chr4 (39-81)||(29651339-29651381)
chr4 (39-89)||(42544487-42544537)
chr4 (40-81)||(11417944-11417985)
chr4 (45-81)||(3847891-3847927)
chr4 (40-80)||(10424123-10424163)
[»] chr5 (9 HSPs)
chr5 (40-236)||(13655512-13655708)
chr5 (101-166)||(4909593-4909658)
chr5 (39-80)||(13654932-13654973)
chr5 (38-81)||(8204118-8204161)
chr5 (45-88)||(33001937-33001980)
chr5 (39-81)||(33002823-33002865)
chr5 (40-81)||(15184024-15184065)
chr5 (45-74)||(39167454-39167483)
chr5 (40-81)||(39950404-39950445)
[»] chr2 (7 HSPs)
chr2 (39-167)||(5276464-5276592)
chr2 (36-81)||(21471013-21471058)
chr2 (37-72)||(45139689-45139724)
chr2 (38-80)||(14574007-14574049)
chr2 (40-81)||(21471961-21472002)
chr2 (39-88)||(37543257-37543306)
chr2 (40-80)||(13134318-13134358)
[»] chr1 (15 HSPs)
chr1 (40-167)||(37874064-37874191)
chr1 (39-167)||(48869768-48869896)
chr1 (40-167)||(35615767-35615893)
chr1 (53-167)||(17496083-17496197)
chr1 (36-88)||(48972445-48972497)
chr1 (40-74)||(8560839-8560873)
chr1 (39-81)||(51987826-51987868)
chr1 (36-81)||(51974433-51974478)
chr1 (40-88)||(193850-193898)
chr1 (39-81)||(35616782-35616824)
chr1 (40-81)||(16270207-16270248)
chr1 (40-81)||(23440872-23440913)
chr1 (40-81)||(51988471-51988512)
chr1 (40-88)||(23440617-23440665)
chr1 (40-88)||(48971705-48971753)
[»] chr3 (11 HSPs)
chr3 (40-167)||(17226968-17227095)
chr3 (40-89)||(17227947-17227996)
chr3 (34-82)||(41755493-41755541)
chr3 (45-88)||(32490195-32490238)
chr3 (38-81)||(36750444-36750487)
chr3 (47-81)||(49757189-49757223)
chr3 (40-77)||(19132563-19132600)
chr3 (39-88)||(44687163-44687212)
chr3 (101-157)||(4486555-4486611)
chr3 (45-81)||(38922748-38922784)
chr3 (40-88)||(38923665-38923713)
[»] chr6 (9 HSPs)
chr6 (41-167)||(9573636-9573762)
chr6 (40-81)||(7531829-7531870)
chr6 (40-88)||(15083318-15083366)
chr6 (39-81)||(7193337-7193379)
chr6 (39-72)||(7532456-7532489)
chr6 (40-81)||(33480635-33480676)
chr6 (40-80)||(9574579-9574619)
chr6 (45-81)||(22582486-22582522)
chr6 (45-81)||(22587317-22587353)
[»] scaffold1037 (1 HSPs)
scaffold1037 (45-166)||(2034-2155)
[»] scaffold1031 (1 HSPs)
scaffold1031 (45-166)||(2152-2273)
[»] chr7 (12 HSPs)
chr7 (41-81)||(42455036-42455076)
chr7 (45-88)||(7677422-7677465)
chr7 (37-81)||(41194510-41194554)
chr7 (99-150)||(23683461-23683512)
chr7 (38-81)||(38778852-38778895)
chr7 (99-145)||(19737901-19737947)
chr7 (39-81)||(37468909-37468951)
chr7 (40-81)||(668179-668220)
chr7 (40-81)||(17145622-17145663)
chr7 (40-81)||(37469012-37469053)
chr7 (40-81)||(38779570-38779611)
chr7 (45-81)||(7677816-7677852)
[»] scaffold0311 (1 HSPs)
scaffold0311 (39-81)||(167-209)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 61451 - 61650
Alignment:
Q  37 ttaggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtct 136  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  61451 ttaggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtct 61550  T
Q  137 ctcaacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcccacctttttcttcttatctttgtccttcttatgttccttct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61551 ctcaacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcccacctttttcttcttatctttgtccttcttatgttccttct 61650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 1365829 - 1366025
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctc 139  Q
    |||| |||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactgttacaatagtctctc 1365928  T
Q  140 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcccacctttttcttcttatctttgtccttcttatgttccttct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1365929 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcccaccttttttttcttatctttgtccttcttatgttccttct 1366025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 39255803 - 39255673
Alignment:
Q  37 ttaggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtct 136  Q
    ||||||| ||||||| |||||||| ||||||||||||| ||||||  |||||| || |||| ||||||||||||||||||||||||||||||||||||||    
T  39255803 ttaggtggcatttaacttgggaaatgagacttctttcccaccatgggaaagtctttcctaatcattggatcatacaaagaacacactattacaatagtct 39255704  T
Q  137 ctcaacactagattcttatcttactatcttc 167  Q
    |||||||||||||| ||||||||||||||||    
T  39255703 ctcaacactagatttttatcttactatcttc 39255673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 44751607 - 44751735
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctct 138  Q
    ||||| ||||||| |||||||||||||||||||||| | ||||  |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  44751607 aggtggcatttaacttgggaaaggagacttctttcccatcatgggaaagtcttttttaatcattggatcatacaaagaacacactattacaatagtctct 44751706  T
Q  139 caacactagattcttatcttactatcttc 167  Q
    |||||||||||| ||||||||||||||||    
T  44751707 caacactagatttttatcttactatcttc 44751735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 26492093 - 26492147
Alignment:
Q  101 ttggatcatacaaagaacacactattacaatagtctctcaacactagattcttat 155  Q
    |||||||| | |||||  |||||||||||||||||||||||||||||||| ||||    
T  26492093 ttggatcacataaagagtacactattacaatagtctctcaacactagatttttat 26492147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 62288 - 62235
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcattt 93  Q
    |||||||||||||||| |||||||||||||||||| |||||   ||||||||||    
T  62288 ggtgacatttaatttgagaaaggagacttctttcccaccataggaaagtcattt 62235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 12351865 - 12351828
Alignment:
Q  130 atagtctctcaacactagattcttatcttactatcttc 167  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  12351865 atagtctctcaacactagatttttatcttactatcttc 12351828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 39254787 - 39254827
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccat 80  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccat 39254827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 41859309 - 41859351
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  41859309 aggtgccatttaatttgggaaaggagagttctttcccaccatg 41859351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 44752618 - 44752578
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccat 80  Q
    |||| ||||||| |||||||||||||||||||||| |||||    
T  44752618 ggtggcatttaacttgggaaaggagacttctttcccaccat 44752578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 47198604 - 47198801
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctct 138  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47198604 aggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctct 47198703  T
Q  139 caacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcccacctttttcttcttatctttgtccttcttatgttccttct 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  47198704 caacactagattcttatcttactatcttcactaaccattgaaacttggattcttttccacctttttcttcttatctttgtctttcttatgttcattct 47198801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 28683508 - 28683703
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctc 139  Q
    |||| ||||||||||||| |||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28683508 ggtggcatttaatttggggaaggagacttctttcccattatgaaaaagtt-tttctaaccattggatcatacaaagaacgcactattacaatagtctctc 28683606  T
Q  140 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcccacctttttcttcttatctttgtccttcttatgttccttct 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28683607 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcccacctttttcttcttatctttgtccttcttatgttccttct 28683703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 167
Target Start/End: Complemental strand, 55160115 - 55159988
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctct 138  Q
    ||||| |||||||||||||||||||||||| ||||  ||||||  |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  55160115 aggtggcatttaatttgggaaaggagactt-tttctcaccatgggaaagtcttttctaatcattggatcatataaagaacacactattacaatagtctct 55160017  T
Q  139 caacactagattcttatcttactatcttc 167  Q
    |||||||||||| ||||||||||||||||    
T  55160016 caacactagatttttatcttactatcttc 55159988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 25371593 - 25371545
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 28684282 - 28684240
Alignment:
Q  38 taggtgacatttaatttgggaaaggagacttctttcctaccat 80  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  28684282 taggtgacatttaatttgggaaaggagacttttttcctaccat 28684240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 43737653 - 43737719
Alignment:
Q  100 attggatcatacaaagaacacactattacaatagtctctcaacactagattcttatcttactatctt 166  Q
    ||||||||||| ||||||||||||||||| |||| |||| |||||| |||| |||| ||||||||||    
T  43737653 attggatcatataaagaacacactattactatagcctcttaacactggatttttatattactatctt 43737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 3848624 - 3848585
Alignment:
Q  42 tgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3848624 tgacatttaatttgggaaaggagacttctttcccaccatg 3848585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 55159186 - 55159221
Alignment:
Q  46 atttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||||||||||||||||||||||||||||||||||    
T  55159186 atttaatttgggaaaggagacttctttcctaccatg 55159221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 36865765 - 36865724
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatg 36865724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 37275095 - 37275136
Alignment:
Q  47 tttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  37275095 tttaatttgggaaaggagacttctttcccaccatgagaaagt 37275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 38695002 - 38694954
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    |||| ||||||||||||||||||||| |||||||| ||||||| |||||    
T  38695002 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 38694954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 47199445 - 47199390
Alignment:
Q  38 taggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcattt 93  Q
    |||||| |||||||||||||||| ||||||||||||| |||||   ||||||||||    
T  47199445 taggtggcatttaatttgggaaaagagacttctttcccaccataggaaagtcattt 47199390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 11417686 - 11417728
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatg 11417728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 29651381 - 29651339
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatg 29651339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 42544487 - 42544537
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtc 89  Q
    ||||| ||||||||||||||||| |||||| ||||| |||||| |||||||    
T  42544487 aggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtc 42544537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 11417985 - 11417944
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatg 11417944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 3847891 - 3847927
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatg 3847927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 10424123 - 10424163
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccat 80  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  10424123 ggtgccatttaatttgggaaaggagagttctttcccaccat 10424163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 13655708 - 13655512
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctc 139  Q
    |||| |||||||||||||||| ||||||||||||| |  |||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13655708 ggtggcatttaatttgggaaaagagacttctttcccattatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 13655609  T
Q  140 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcccacctttttcttcttatctttgtccttcttatgttccttct 236  Q
    ||||||  |||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13655608 aacactgaattcttatcttactatcttcactaaccattaaaattgcgattctttcccacctttttcttcttatctttgtccttcttatgttccttct 13655512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 4909658 - 4909593
Alignment:
Q  101 ttggatcatacaaagaacacactattacaatagtctctcaacactagattcttatcttactatctt 166  Q
    |||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||| || |||||    
T  4909658 ttggatcacataaagagcacactattacaatagtctctcaacactagatttttatctcaccatctt 4909593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 13654932 - 13654973
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccat 80  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccat 13654973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 8204118 - 8204161
Alignment:
Q  38 taggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||    
T  8204118 taggtgccatttaatttgggaaaggagagttctttcccaccatg 8204161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 33001937 - 33001980
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||    
T  33001937 catttaatttgggaaaggagagttctttcccaccatggaaaagt 33001980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 33002865 - 33002823
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  33002865 aggtgtcatttaatttgggaaaggagagttctttcccaccatg 33002823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 15184065 - 15184024
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatg 15184024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 39167483 - 39167454
Alignment:
Q  45 catttaatttgggaaaggagacttctttcc 74  Q
    ||||||||||||||||||||||||||||||    
T  39167483 catttaatttgggaaaggagacttctttcc 39167454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 39950404 - 39950445
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatg 39950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 5276464 - 5276592
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctct 138  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||  |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  5276464 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtcttttctaatcattggatcatacaaagaacacactgttacaatagtctct 5276563  T
Q  139 caacactagattcttatcttactatcttc 167  Q
    |||||||||||| ||||||||||||||||    
T  5276564 caacactagatttttatcttactatcttc 5276592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 21471013 - 21471058
Alignment:
Q  36 tttaggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||    
T  21471013 tttaggtgccatttaatttgggaaaggagagttctttcccaccatg 21471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 45139689 - 45139724
Alignment:
Q  37 ttaggtgacatttaatttgggaaaggagacttcttt 72  Q
    ||||||| ||||||||||||||||||||||||||||    
T  45139689 ttaggtggcatttaatttgggaaaggagacttcttt 45139724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 14574049 - 14574007
Alignment:
Q  38 taggtgacatttaatttgggaaaggagacttctttcctaccat 80  Q
    |||||| ||||||||||||||||||||| |||||||| |||||    
T  14574049 taggtgccatttaatttgggaaaggagagttctttcccaccat 14574007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 21472002 - 21471961
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatg 21471961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 37543257 - 37543306
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    ||||| |||||||| |||||||| | |||||||||||| |||||||||||    
T  37543257 aggtgccatttaatatgggaaagtaaacttctttcctatcatgaaaaagt 37543306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 13134318 - 13134358
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccat 80  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  13134318 ggtgccatttaatttgggaaaggagagttctttcccaccat 13134358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 37874064 - 37874191
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctc 139  Q
    |||||||||||| |||||||| ||||||||||||| ||||||  |||||| || |||| |||||||||||||||||||||||||||||||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccatgggaaagtctttactaatcattggatcatacaaagaacacactattacaatagtctctc 37874163  T
Q  140 aacactagattcttatcttactatcttc 167  Q
    ||||||||||| ||||||||||||||||    
T  37874164 aacactagatttttatcttactatcttc 37874191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 48869768 - 48869896
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctct 138  Q
    ||||||||||||| |||||||||||||||||||| | ||||||  ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48869768 aggtgacatttaacttgggaaaggagacttcttttccaccatgggaaaatcttttctaatcattggatcatacaaagaacacactattacaatagtctct 48869867  T
Q  139 caacactagattcttatcttactatcttc 167  Q
    |||||||||||| ||||| ||||||||||    
T  48869868 caacactagatttttatcatactatcttc 48869896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 35615767 - 35615893
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctc 139  Q
    |||| ||||||| |||| ||||||||||||||||| ||||||  ||  || ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35615767 ggtggcatttaacttggaaaaggagacttctttcccaccatgggaat-tcttttctaatcattggatcatacaaagaacacactattacaatagtctctc 35615865  T
Q  140 aacactagattcttatcttactatcttc 167  Q
    ||||||||||| ||||||||||||||||    
T  35615866 aacactagatttttatcttactatcttc 35615893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 17496197 - 17496083
Alignment:
Q  53 ttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctcaacactagattct 152  Q
    |||||||||||||||||| | | |||||  ||||||  ||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| |    
T  17496197 ttgggaaaggagacttctattccaccatagaaaagtgttttttaatcattggatcatataaagaacacactattacaatagtctctccacactagattat 17496098  T
Q  153 tatcttactatcttc 167  Q
    |||||||||||||||    
T  17496097 tatcttactatcttc 17496083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 48972497 - 48972445
Alignment:
Q  36 tttaggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||| ||||||    
T  48972497 tttaggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagt 48972445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 8560839 - 8560873
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcc 74  Q
    |||||||||||||||||||||||||||||||||||    
T  8560839 ggtgacatttaatttgggaaaggagacttctttcc 8560873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 51987826 - 51987868
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  51987826 aggtggcatttaatttgggaaaggagacttctttcccaccatg 51987868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 51974433 - 51974478
Alignment:
Q  36 tttaggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||    
T  51974433 tttaggtgccatttaatttgggaaaggagagttctttcccaccatg 51974478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 193850 - 193898
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    |||| ||||||||||||||||||||| |||||||| ||||||| |||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 35616824 - 35616782
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatg 35616782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 16270207 - 16270248
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatg 16270248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 23440913 - 23440872
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatg 23440872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 51988512 - 51988471
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| |||||||||||||||||||||||||||| | ||||||    
T  51988512 ggtggcatttaatttgggaaaggagacttcttttccaccatg 51988471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 23440617 - 23440665
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    |||| ||||||||||||||||||||| |||||||| || ||| ||||||    
T  23440617 ggtgccatttaatttgggaaaggagagttctttccaactatggaaaagt 23440665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 48971705 - 48971753
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    |||| ||||||||||||||||||||| |||||||| || |||| |||||    
T  48971705 ggtgtcatttaatttgggaaaggagagttctttcccacaatgagaaagt 48971753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 17226968 - 17227095
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctc 139  Q
    |||| ||||||||||||||||||||| |||||||| ||||||  ||| || |||||||||| || ||||||||||||||||||||||||||||||| |||    
T  17226968 ggtggcatttaatttgggaaaggagatttctttcccaccatgggaaaatcttttctaaccaatgaatcatacaaagaacacactattacaatagtccctc 17227067  T
Q  140 aacactagattcttatcttactatcttc 167  Q
    ||||||||||| ||||||| ||||||||    
T  17227068 aacactagatttttatcttcctatcttc 17227095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 17227996 - 17227947
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtc 89  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  17227996 ggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtc 17227947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 41755493 - 41755541
Alignment:
Q  34 aatttaggtgacatttaatttgggaaaggagacttctttcctaccatga 82  Q
    |||||||||| ||||||||||||||||||||| || ||||| |||||||    
T  41755493 aatttaggtgtcatttaatttgggaaaggagagttttttcccaccatga 41755541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 32490238 - 32490195
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||    
T  32490238 catttaatttgggaaaggagagttctttcccaccatggaaaagt 32490195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 36750487 - 36750444
Alignment:
Q  38 taggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||    
T  36750487 taggtgccatttaatttgggaaaggagagttctttcccaccatg 36750444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 49757223 - 49757189
Alignment:
Q  47 tttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||||||||||||||||||| ||||||||||||    
T  49757223 tttaatttgggaaaggagacttttttcctaccatg 49757189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 19132563 - 19132600
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctac 77  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  19132563 ggtgccatttaatttgggaaaggagagttctttcctac 19132600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 44687212 - 44687163
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    ||||| ||||||||||||||||||||| |||||| | |||||| ||||||    
T  44687212 aggtgccatttaatttgggaaaggagaattcttttccaccatggaaaagt 44687163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 4486611 - 4486555
Alignment:
Q  101 ttggatcatacaaagaacacactattacaatagtctctcaacactagattcttatct 157  Q
    |||||||| | ||| | ||||||||||||||||||||| ||||||| ||| ||||||    
T  4486611 ttggatcacataaaaagcacactattacaatagtctctaaacactaaatttttatct 4486555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 38922748 - 38922784
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||||||||||||||||||| || ||||||||||||    
T  38922748 catttaatttgggaaaggagagttatttcctaccatg 38922784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 38923713 - 38923665
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    |||| |||||||||||||||| |||| |||||||| |||||| ||||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagt 38923665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 9573636 - 9573762
Alignment:
Q  41 gtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctca 140  Q
    ||||||||||| |||||||| ||||||||||| | || ||   |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  9573636 gtgacatttaacttgggaaatgagacttcttttccactataggaaagtcttttctaatcattggatcatacaaagaacacactgttacaatagtctctca 9573735  T
Q  141 acactagattcttatcttactatcttc 167  Q
    |||||||||| ||||||||||||||||    
T  9573736 acactagatttttatcttactatcttc 9573762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 7531829 - 7531870
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  7531829 ggtggcatttaatttgggaaaggagacttctttcctaccatg 7531870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 15083366 - 15083318
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    |||| ||||||||||||||||||||| |||||||| ||||||| |||||    
T  15083366 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 15083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 7193337 - 7193379
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  7193337 aggtgccatttaatttgggaaaggagagttctttcccaccatg 7193379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 7532489 - 7532456
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttcttt 72  Q
    ||||| ||||||||||||||||||||||||||||    
T  7532489 aggtggcatttaatttgggaaaggagacttcttt 7532456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 33480676 - 33480635
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatg 33480635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 9574619 - 9574579
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccat 80  Q
    |||| ||||||| |||||||||||||||||||||| |||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccat 9574579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 22582522 - 22582486
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  22582522 catttaatttgggaaaggagagttctttcccaccatg 22582486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 22587353 - 22587317
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  22587353 catttaatttgggaaaggagagttctttcccaccatg 22587317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 2034 - 2155
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctcaacac 144  Q
    |||||||  ||||||| || |||||||||| || ||| ||||||  ||| ||| ||||| ||||||  |||||||||||||||| ||||||||| |||||    
T  2034 catttaacctgggaaatgatacttctttcccactatggaaaagtgttttttaatcattgaatcatatgaagaacacactattactatagtctcttaacac 2133  T
Q  145 tagattcttatcttactatctt 166  Q
    | |||| |||| ||||||||||    
T  2134 tggatttttatattactatctt 2155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 2152 - 2273
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatgaaaaagtcatttctaaccattggatcatacaaagaacacactattacaatagtctctcaacac 144  Q
    |||||||  ||||||| || |||||||||| || ||| ||||||  ||| ||| ||||| ||||||  |||||||||||||||| ||||||||| |||||    
T  2152 catttaacctgggaaatgatacttctttcccactatggaaaagtgttttttaatcattgaatcatatgaagaacacactattactatagtctcttaacac 2251  T
Q  145 tagattcttatcttactatctt 166  Q
    | |||| |||| ||||||||||    
T  2252 tggatttttatattactatctt 2273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 42455036 - 42455076
Alignment:
Q  41 gtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  42455036 gtgacatttaatttgggaaaggagacttcttttctaccatg 42455076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 7677422 - 7677465
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatgaaaaagt 88  Q
    ||||||||||||||||||||| |||||||| |||||||||||||    
T  7677422 catttaatttgggaaaggagaattctttcccaccatgaaaaagt 7677465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 41194510 - 41194554
Alignment:
Q  37 ttaggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||    
T  41194510 ttaggtgccatttaatttgggaaaggagagttctttcccaccatg 41194554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 23683461 - 23683512
Alignment:
Q  99 cattggatcatacaaagaacacactattacaatagtctctcaacactagatt 150  Q
    |||||||||||| || ||||||| |||||||||||||| |||||||| ||||    
T  23683461 cattggatcatataaggaacacattattacaatagtctttcaacacttgatt 23683512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 38778852 - 38778895
Alignment:
Q  38 taggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||    
T  38778852 taggtgccatttaatttgggaaaggagagttctttcccaccatg 38778895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 19737947 - 19737901
Alignment:
Q  99 cattggatcatacaaagaacacactattacaatagtctctcaacact 145  Q
    |||| ||||||| ||  ||||||||||||||||||||||||||||||    
T  19737947 cattagatcatataagaaacacactattacaatagtctctcaacact 19737901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 37468909 - 37468951
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  37468909 aggtgccatttaatttgggaaaggagagttctttcccaccatg 37468951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 668179 - 668220
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatg 668220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 17145622 - 17145663
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatg 17145663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 37469053 - 37469012
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatg 37469012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 38779611 - 38779570
Alignment:
Q  40 ggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatg 38779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 7677852 - 7677816
Alignment:
Q  45 catttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccatg 7677816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 209 - 167
Alignment:
Q  39 aggtgacatttaatttgggaaaggagacttctttcctaccatg 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  209 aggtgccatttaatttgggaaaggagagttctttcccaccatg 167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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