View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_250 (Length: 240)
Name: NF10092A_low_250
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_250 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 42959791 - 42960003
Alignment:
| Q |
25 |
cacttacatatatgtgtttgaaagggcttatcaaaatatattataacatgtttataaattgttttcagcttatttcgttaaactg------------agt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
42959791 |
cacttacatatatgtgtttgaaagggcttatcaaaatatattataacatgtttataaactgttttcagcttatttcgttaaactgttcatgaaacggagt |
42959890 |
T |
|
| Q |
113 |
tatcagtaagccctatacatacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42959891 |
tatcagtaagccctatacatacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagt |
42959990 |
T |
|
| Q |
213 |
ctgttaacaccaa |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42959991 |
ctgttaacaccaa |
42960003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 5504827 - 5504741
Alignment:
| Q |
130 |
catacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgt |
216 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| | ||| || ||||||| |
|
|
| T |
5504827 |
cataccttcccatcatcatcacagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgt |
5504741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 11707142 - 11707094
Alignment:
| Q |
51 |
cttatcaaaatatattataacatgtttataaattgttttcagcttattt |
99 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
11707142 |
cttatcaaaatagattatgacatgtttataagttgttttcagcttattt |
11707094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 35608160 - 35608112
Alignment:
| Q |
123 |
ccctatacatacctgcccatcatcatgacagtagcttgaggatttgttc |
171 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
35608160 |
ccctgtacatgcctgcccatcatcatgacagtagcttgagaattggttc |
35608112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 35064923 - 35064893
Alignment:
| Q |
70 |
acatgtttataaattgttttcagcttatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35064923 |
acatgtttataaattgttttcagcttatttc |
35064893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University