View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_253 (Length: 238)
Name: NF10092A_low_253
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_253 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 5081850 - 5082007
Alignment:
| Q |
60 |
tcaagctgttatttcctatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaa |
159 |
Q |
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| T |
5081850 |
tcaagctgttatttcccatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaa |
5081949 |
T |
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| Q |
160 |
taaacaaat---atgtataagatgatgcatagcagtaccgatgcatgaaatgcttaag |
214 |
Q |
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| T |
5081950 |
taaacaaattacatgtataagatgatgcatagcagtaccgatgcatgaaatgcttaag |
5082007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 5100136 - 5100037
Alignment:
| Q |
60 |
tcaagctgttatttcctatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaa |
159 |
Q |
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| T |
5100136 |
tcaagctgttatttcccattagtagaagttgaagttgactgagatggccaatctccattggtatcgaacctaaaatcaaatatcataaagaaacaacaaa |
5100037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 5117673 - 5117588
Alignment:
| Q |
82 |
tagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaa |
167 |
Q |
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| T |
5117673 |
tagaagctgaagttgattgagatggccaatctcctttggtattgaacctaacatcacatatcatagagaaaaaacaaataaacaaa |
5117588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 14414155 - 14414262
Alignment:
| Q |
60 |
tcaagctgttatttcctatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaa |
159 |
Q |
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| T |
14414155 |
tcaagttgttattccacatttgtagaatctgaagttgattgagatggccaatctccattggtaacgaacctaacatcacatatcataaagaaacaacaca |
14414254 |
T |
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| Q |
160 |
taaacaaa |
167 |
Q |
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| T |
14414255 |
taaacaaa |
14414262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 16884405 - 16884299
Alignment:
| Q |
60 |
tcaagctgttatttcctatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaa |
159 |
Q |
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| T |
16884405 |
tcaagctgttatttcccatttgtagaacctgaatttgattgagattgccaatctccataggtatcaaacctataagaacacatca-tgagaaacaacaaa |
16884307 |
T |
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| Q |
160 |
taaacaaa |
167 |
Q |
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|||||||| |
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| T |
16884306 |
taaacaaa |
16884299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 28518816 - 28518857
Alignment:
| Q |
24 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagc |
65 |
Q |
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| T |
28518816 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagc |
28518857 |
T |
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