View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_26 (Length: 408)

Name: NF10092A_low_26
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_26
NF10092A_low_26
[»] chr1 (6 HSPs)
chr1 (8-402)||(14877692-14878081)
chr1 (209-402)||(14759659-14759852)
chr1 (119-380)||(14785943-14786204)
chr1 (174-380)||(14766915-14767121)
chr1 (165-269)||(14873113-14873217)
chr1 (332-380)||(14873265-14873313)
[»] scaffold0042 (1 HSPs)
scaffold0042 (125-402)||(83864-84141)
[»] chr3 (1 HSPs)
chr3 (265-402)||(11999596-11999733)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 402
Target Start/End: Original strand, 14877692 - 14878081
Alignment:
Q  8 tggtgttgctttgatcaaggtaatttttcttttgcaacatctagtagtgtgtatacatataatcacaccaaacataaccctattcgatacaaagcaaatt 107  Q
    |||||||||||| ||||||||| ||||||||  |||||||||||  |||| || | |||||||||||||||||||||||||   ||||| ||||||||||    
T  14877692 tggtgttgctttaatcaaggtattttttcttgcgcaacatctag--gtgtatacatatataatcacaccaaacataaccct---cgataaaaagcaaatt 14877786  T
Q  108 caacaaaaacatttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatc 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14877787 caacaaaaacatatttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttagtaggctggttaatgttgttcttaagaacactatc 14877886  T
Q  208 caactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagaca 307  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14877887 caactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaacctttctctcctttatcatttgtaaatggaatatgaaagaca 14877986  T
Q  308 gcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14877987 gcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaacatctcgaaatccagctcgtgt 14878081  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 402
Target Start/End: Complemental strand, 14759852 - 14759659
Alignment:
Q  209 aactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacag 308  Q
    |||||||||||||||||||||||||||||||  |||         ||||||||||||||||  ||||||||| ||||| | ||||| |||||||| ||||    
T  14759852 aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatatgaaatacag 14759753  T
Q  309 cttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt 402  Q
    |||||||||||| |||| |||| |||||||||||   ||||||||| | |||||||||||||||||| ||||  |||| || |||||| |||||    
T  14759752 cttgaccaggaatagcaacatcacctcctttagccattcctccatagagagctttcccccaaccaaattcaacatctccaagtccagcacgtgt 14759659  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 119 - 380
Target Start/End: Original strand, 14785943 - 14786204
Alignment:
Q  119 tttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaactctttaa 218  Q
    ||||||||||||||||| |||||   ||| || ||  |||| | ||||| |||| |||||| |||| ||||  ||||||| ||||||||||  |||||||    
T  14785943 tttttaaaggactacaatgaagaaacaatgataccggattttttatcacacttagtaggcttgttagtgttactcttaagcacactatccatttctttaa 14786042  T
Q  219 ccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccagg 318  Q
    | |||||||||||||||||| ||||         ||||||||||||||||| |||||||||| ||||| | ||||| |||||||||  |||  |||||||    
T  14786043 caaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaagaccagg 14786142  T
Q  319 aagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa 380  Q
    || | |||||||  ||||| |||||||||||||||| |  | ||||||||||||| ||||||    
T  14786143 aatatcaccatctgctcctctagctggtcctccatagatgggtttcccccaaccataatcaa 14786204  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 174 - 380
Target Start/End: Original strand, 14766915 - 14767121
Alignment:
Q  174 taggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctc 273  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| |||         ||||||||||||||||| |||    
T  14766915 taggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctc 14767014  T
Q  274 tcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaacca 373  Q
    ||||||| ||||| | ||||| |||| ||||  |||   |||||| | ||||||| | ||||||||||||||||| ||||| |||||||| |||||||||    
T  14767015 tcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatacagcttttccccaacca 14767114  T
Q  374 aaatcaa 380  Q
    || ||||    
T  14767115 aattcaa 14767121  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 14873113 - 14873217
Alignment:
Q  165 cacccttactaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaa 264  Q
    ||||| || |||| |||||||| ||||||||||| |||| ||||||||||||||  |||||||||||| ||| |||||||       |||||||||||||    
T  14873113 cacccatagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaa 14873212  T
Q  265 acctt 269  Q
    |||||    
T  14873213 acctt 14873217  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 14873265 - 14873313
Alignment:
Q  332 cctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa 380  Q
    ||||||||||||||||||||||||  || ||| |||||||| |||||||    
T  14873265 cctcctttagctggtcctccataacaaggttttccccaaccgaaatcaa 14873313  T

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Target: scaffold0042 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 125 - 402
Target Start/End: Original strand, 83864 - 84141
Alignment:
Q  125 aaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaactctttaaccaacc 224  Q
    ||||||||||||||||| ||||| || ||| ||||   ||||||| || |||||  |||||||||||||||||||||  |||||||||||||||||||||    
T  83864 aaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaacc 83963  T
Q  225 tctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagc 324  Q
    |||| ||||||||||||||        |||||||||| ||||||| |||||||||| ||||| ||||||| |||| || |  ||    |||||||  ||     
T  83964 tctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaatggtagaaataccaggattagt 84063  T
Q  325 accatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt 402  Q
    |||||| ||| || |||||  |||||||||||||||||||||||||||||||||||  |||| ||||||||| |||||    
T  84064 accatctcctgctctagctaatcctccataaacagctttcccccaaccaaaatcaacatctctaaatccagcacgtgt 84141  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 402
Target Start/End: Original strand, 11999596 - 11999733
Alignment:
Q  265 acctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttc 364  Q
    ||||| |||||||||| ||||| ||||||  ||| |||||  |||  |||| |||  |||||| || ||||||||||||||||||||||| |||| ||||    
T  11999596 accttcctctcctttaacatttttaaaagctatacgaaagcaagcaagaccgggattagcaccgtctcctcctttagctggtcctccatacacaggtttc 11999695  T
Q  365 ccccaaccaaaatcaatgtctcgaaatccagctcgtgt 402  Q
    ||||||||||| ||||  |||| ||||||||| |||||    
T  11999696 ccccaaccaaactcaacatctctaaatccagcacgtgt 11999733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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