View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_260 (Length: 236)
Name: NF10092A_low_260
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_260 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35742599 - 35742834
Alignment:
| Q |
1 |
atatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaatt |
100 |
Q |
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| T |
35742599 |
atatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacaaaatcggaatccacttatcgaggtgttcaatt |
35742698 |
T |
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| Q |
101 |
gtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattttttaatttactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
35742699 |
gtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattctataagttactg |
35742798 |
T |
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| Q |
201 |
gatcttcgagttcttccaactcctcgtactcttcaa |
236 |
Q |
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| T |
35742799 |
gatcttcgagatcttcgagatcctcgtactcttcaa |
35742834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 35748964 - 35749152
Alignment:
| Q |
1 |
atatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaatt |
100 |
Q |
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|||| ||||||||||| ||||||| ||| ||||| |||||||||||||||||||| |||| ||| | | |||||||||| || |||| ||||||| |
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| T |
35748964 |
atatggcatttgatcgacatgtgttccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactgaggaattcaatt |
35749063 |
T |
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| Q |
101 |
gtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataatttt |
189 |
Q |
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| T |
35749064 |
atgatcttgaaattgtagtcataaggtatgaaaagatgaaacttatgtatcggaccgttgtgttgcataagaacatctgtgatgatttt |
35749152 |
T |
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