View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_266 (Length: 235)
Name: NF10092A_low_266
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_266 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 25988671 - 25988481
Alignment:
| Q |
17 |
ttggacaatgaggcactaaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaagcacattggatgtccattatagacctt |
116 |
Q |
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| T |
25988671 |
ttggacaatgaggcactaaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaagcacattggatgtccattatagacctt |
25988572 |
T |
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| Q |
117 |
cttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaactaagacaaacaaggat |
207 |
Q |
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| T |
25988571 |
cttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaactaagacaaacaaggat |
25988481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 25320973 - 25320891
Alignment:
| Q |
110 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
192 |
Q |
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| T |
25320973 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
25320891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 26150666 - 26150584
Alignment:
| Q |
110 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
192 |
Q |
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| T |
26150666 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
26150584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 25321020 - 25320975
Alignment:
| Q |
17 |
ttggacaatgaggcactaaactcacactccctatttatagtggcgc |
62 |
Q |
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| T |
25321020 |
ttggacaatgaggcactaaactcacactccctatttatagtggcgc |
25320975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 26150713 - 26150668
Alignment:
| Q |
17 |
ttggacaatgaggcactaaactcacactccctatttatagtggcgc |
62 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26150713 |
ttggacaatgaggcactaaactcacactccctatttatagtggcgc |
26150668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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