View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_272 (Length: 233)
Name: NF10092A_low_272
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_272 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 57 - 233
Target Start/End: Complemental strand, 41929077 - 41928892
Alignment:
| Q |
57 |
agttctctatcctcatcatcatcatctcctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaa |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
41929077 |
agttctctatcctcatcatcatcatctcctaaaattgcacccatttctgttgggtcggtaagcacggaatttggatccaatggaaaattatgagcttgaa |
41928978 |
T |
|
| Q |
157 |
aatcct---------gtggtggaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcgg |
233 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41928977 |
aatcctgtggcggcggtggtggaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcgg |
41928892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 41938295 - 41938122
Alignment:
| Q |
69 |
tcatcatcatcatctcctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcct------ |
162 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41938295 |
tcatcatcaccatctcctaaaattgcacccatttctgttgggtcggcaaacatgaaattcggatccaatggaaaattatgagcttgaaaatcctgtggcg |
41938196 |
T |
|
| Q |
163 |
---gtggtggaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcgg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41938195 |
gcggtggtggaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcgg |
41938122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 41911319 - 41911152
Alignment:
| Q |
69 |
tcatcatcatcatctcctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtggtg |
168 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
41911319 |
tcatcatcatcatcatctaaaattgcacccatttctgttgggtcggcaagcacgaaatttggatccaatggaaaattatgagcctgaaaatcctgtggcg |
41911220 |
T |
|
| Q |
169 |
---gaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcgg |
233 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||| ||||||| ||| | ||||||||||||||||||| |
|
|
| T |
41911219 |
gcagtggtggaggtgggggagcgtattgacttacgcgagcacgatggcaaaaaagttggatgtagcgg |
41911152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University