View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_275 (Length: 233)
Name: NF10092A_low_275
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_275 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 5750390 - 5750171
Alignment:
| Q |
14 |
ctacgttaattgaccaatttaatttagagtcttcaagttcaaattagttgatttttgtgacctcttggttaatttactcatgtaatgatcttggttttat |
113 |
Q |
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| T |
5750390 |
ctacgttaattgacaaatttaatttagagtcttcaagttcaaattagttgatttttgtgacctcttggttaatttactcatgtaataatcttggttttat |
5750291 |
T |
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| Q |
114 |
tatcttcgtttgttttggttagctatgttaaatactttattcttcaattttaggtgttgtgtgtatatgcatgtgcaaatggtagtatggtatatattaa |
213 |
Q |
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| T |
5750290 |
tatcttcgtttgttttggttagctatgttaaatactttattcttcaattttaggtgttgtgtgtatatgcatgtgcaaatggtagtatggtatatattaa |
5750191 |
T |
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| Q |
214 |
ttgagtccaccttgatttat |
233 |
Q |
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| T |
5750190 |
ttgagtccaccttgatttat |
5750171 |
T |
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