View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_28 (Length: 405)
Name: NF10092A_low_28
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 33992307 - 33992689
Alignment:
| Q |
1 |
ataattcaggagaacatcacgaacataagtgtaagcatatattttatgtcattcatcaatccagtttatttttacatgtatattaatcaaggtttaaatg |
100 |
Q |
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| T |
33992307 |
ataattcaggagaacatcacgaacataagtgtaagcatatattttatgtcattcatcagtccagtttttttttacatgtatattaatcaaggtttaaatg |
33992406 |
T |
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| Q |
101 |
aggtctcctattttcaatagtttaattatttatatttatatttatatgacatatagtgcaacatatgattacatttcatgaaaaatatttaaacaacttg |
200 |
Q |
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| T |
33992407 |
aggtctcctattttcaatagtttaattatt------tatatttatatgacatatagtgcaacatatgattacatttcatgaaaaatatttaaacaacttg |
33992500 |
T |
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| Q |
201 |
cagctccatagtagaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaacccttcagaggaggatgaagagtcactaagg |
300 |
Q |
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| T |
33992501 |
cagctccatagtagaagaagtggaaatgggatcagaagagctaaacaagaaccttttacagcatcaaaacccttcagaggaggatgaagagtccctaagg |
33992600 |
T |
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| Q |
301 |
aaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagt |
389 |
Q |
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| T |
33992601 |
aaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagt |
33992689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 212 - 389
Target Start/End: Original strand, 33982754 - 33982931
Alignment:
| Q |
212 |
tagaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaacccttcagaggaggatgaagagtcactaaggaaaagggtatg |
311 |
Q |
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| T |
33982754 |
tagaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaatacttcagaggaggaagaagagccactaaggaaaagagtatg |
33982853 |
T |
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| Q |
312 |
ggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagt |
389 |
Q |
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| T |
33982854 |
gaaagaaagcaagaagttgtggatagtagcaggccctgccatgttcactaggttttcaacatttggtatcatgatagt |
33982931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 9219525 - 9219437
Alignment:
| Q |
287 |
aagagtcactaaggaaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacattt |
375 |
Q |
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| T |
9219525 |
aagaatcactaaggaaaagggtatgggaagaaagcaagaagatttgggtagtggcagggcctgcaatattcacaaaattttcaacattt |
9219437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 9240596 - 9240524
Alignment:
| Q |
286 |
gaagagtcactaaggaaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattca |
358 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||| | |||| ||||||||| ||||| ||||||| |
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| T |
9240596 |
gaagaatcactaagaaaaagggtatgggaagaaagcaagaagatttggagagtagcagggcctgcaatattca |
9240524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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