View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_280 (Length: 232)
Name: NF10092A_low_280
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_280 |
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| [»] scaffold0521 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: scaffold0521 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0521
Description:
Target: scaffold0521; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 4912 - 5019
Alignment:
| Q |
124 |
tgaacctatgagaagatcctcgttgccggaggagacaaagtggcggctgatacagggaagtgttcgttaaaagttctctttggcttttggtttagttttg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4912 |
tgaacctatgagaagatcctcgttgccggaggagacaaagtggcggctgatata-ggcagtgttcgttaaaagttctctttggcttttggtttagttttg |
5010 |
T |
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| Q |
224 |
tgggtttga |
232 |
Q |
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| T |
5011 |
tcggtttga |
5019 |
T |
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Target: scaffold0521; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 4798 - 4878
Alignment:
| Q |
20 |
catcaacacctgaagcaaaaccaaaaccaagcaggagttagggcaggcgtcagcatgcgtggacttgatacaaaagaaatt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||| |
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| T |
4798 |
catcgacacctgaagcaaaaccaaaaccaagcaggagttagggcaggagtcagcatgtgtggacttaaaacaaaagaaatt |
4878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 18290767 - 18290874
Alignment:
| Q |
124 |
tgaacctatgagaagatcctcgttgccggaggagacaaagtggcggctgatacagggaagtgttcgttaaaagttctctttggcttttggtttagttttg |
223 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18290767 |
tgaacctatgagaagatcctcgttgtcggaggagataaagtggcggctgatacagg-aagtgttcgttaaaagttctctttggcttttggtttagttttg |
18290865 |
T |
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| Q |
224 |
tgggtttga |
232 |
Q |
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| T |
18290866 |
ttggtttga |
18290874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 18290669 - 18290749
Alignment:
| Q |
20 |
catcaacacctgaagcaaaaccaaaaccaagcaggagttagggcaggcgtcagcatgcgtggacttgatacaaaagaaatt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |
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| T |
18290669 |
catcgacacctgaagcaaaaccaaaaccaagcaggagttagggcaggagtctgcatgtgtggacttgatacaaaagaaatt |
18290749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 35345399 - 35345325
Alignment:
| Q |
124 |
tgaacctatgagaagatcctcgttgccggaggagacaaagtggcggctgatacagggaagtgttcgttaaaagttc |
199 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35345399 |
tgaacctatgagaagaacctcgttgccggaggagacaaagtggcggctgataca-ggaagtgttcgttaaaagttc |
35345325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 2272460 - 2272386
Alignment:
| Q |
124 |
tgaacctatgagaagatcctcgttgccggaggagacaaagtggcggctgatacagggaagtgttcgttaaaagttc |
199 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2272460 |
tgaacctatgagaagaacctcgttgccggaggagacaaagtggcggctgataca-ggaagtgttcgttaaaagttc |
2272386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 39343947 - 39343873
Alignment:
| Q |
124 |
tgaacctatgagaagatcctcgttgccggaggagacaaagtggcggctgatacagggaagtgttcgttaaaagttc |
199 |
Q |
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| T |
39343947 |
tgaacctatgagaagaacctcgttgccggaggagacaaagtggcggctgataca-ggaagtgttcgttaaaagttc |
39343873 |
T |
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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 4009791 - 4009717
Alignment:
| Q |
124 |
tgaacctatgagaagatcctcgttgccggaggagacaaagtggcggctgatacagggaagtgttcgttaaaagttc |
199 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4009791 |
tgaacctatgagaagaacctcgttgccggaggagacaaagtggcggctgataca-ggaagtgttcgttaaaagttc |
4009717 |
T |
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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 18202211 - 18202154
Alignment:
| Q |
141 |
cctcgttgccggaggagacaaagtggcggctgatacagggaagtgttcgttaaaagttc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18202211 |
cctcgttgccggaggagacaaagtggcggctgataca-ggaagtgttcgttaaaagttc |
18202154 |
T |
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