View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_281 (Length: 232)
Name: NF10092A_low_281
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_281 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0078 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26992376 - 26992614
Alignment:
| Q |
1 |
atatggggtgtaattagaaaaattcaaacttatatgnnnnnnnnnnnnaatgacaatactgttgctttgctggctgtcatatttattagtatttgtttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26992376 |
atatggggtgtaattagaaaaattcaaacttatatgtttttattttttaatgacaatactgttgctttgctggctctcatatttattagtatttgtttct |
26992475 |
T |
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| Q |
101 |
atcttttggtcaatagtctctac-------gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagtttat |
193 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992476 |
atcttttggtcaatagtccctacttcttaagacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagtttat |
26992575 |
T |
|
| Q |
194 |
tttctttctttgtaaggctagtatttgcaactgaataaa |
232 |
Q |
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| T |
26992576 |
tttctttctttgtaaggctagtatttgcaactgaataaa |
26992614 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 4832334 - 4832399
Alignment:
| Q |
124 |
gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagt |
189 |
Q |
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| T |
4832334 |
gacttattagtgggacttagttagttttctccacattccacgtttttgttagtggactgagttagt |
4832399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 1751456 - 1751391
Alignment:
| Q |
124 |
gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagt |
189 |
Q |
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| T |
1751456 |
gacttattagtgggacttagttagttttctccacattccacgtttctgttagtggactgagttagt |
1751391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 45000181 - 45000058
Alignment:
| Q |
73 |
gctgtcatatttattagtatttgtttctatcttttggtcaatagtctctac-------gacttattactgggacttggttagttttctccacattccacg |
165 |
Q |
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| T |
45000181 |
gctgtcatagttattagtatctgtttctatctttaagttaataatccctacttcttaggatttattagtgggacttagttagttttctccacattccacg |
45000082 |
T |
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| Q |
166 |
tttgtgttagtggagtgacttagt |
189 |
Q |
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||| |||||||||| ||| ||||| |
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| T |
45000081 |
tttctgttagtggactgagttagt |
45000058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 1755809 - 1755750
Alignment:
| Q |
127 |
ttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgactt |
186 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
1755809 |
ttattagtgggacttaattagttttctccacattccacgtttttgttagtggagtaactt |
1755750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 19286 - 19351
Alignment:
| Q |
124 |
gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagt |
189 |
Q |
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| T |
19286 |
gacttattagtgggacttagtgagttttctccacattccacgtttctgttagtggactgagttagt |
19351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 19346 - 19387
Alignment:
| Q |
171 |
gttagtggagtgacttagtttattttctttctttgtaaggct |
212 |
Q |
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| T |
19346 |
gttagtggagtaacttaatttattttctttctttgtaaggct |
19387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 37254006 - 37254071
Alignment:
| Q |
124 |
gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagt |
189 |
Q |
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| T |
37254006 |
gacttattagtgggacttagtgagttttctccacattccacgtttctgttagtggactgagttagt |
37254071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 37254066 - 37254107
Alignment:
| Q |
171 |
gttagtggagtgacttagtttattttctttctttgtaaggct |
212 |
Q |
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| T |
37254066 |
gttagtggagtaacttaatttattttctttctttgtaaggct |
37254107 |
T |
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