View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_287 (Length: 230)
Name: NF10092A_low_287
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_287 |
 | |
|
| [»] scaffold0009 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0009 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 40183 - 40010
Alignment:
| Q |
34 |
agatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacacacga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40183 |
agatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacacacga |
40084 |
T |
|
| Q |
134 |
aaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40083 |
aaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgtcgttttgctgcttca |
40010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 33511 - 33391
Alignment:
| Q |
85 |
ggtacatttaatctatccaatttgaggaccacaagtgtttcacacacgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaa |
184 |
Q |
| |
|
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||| | |
|
|
| T |
33511 |
ggtacaattattctatccaatttgagaaccacaagtgtttcacacacgaaaatggtaggcgacaaggtcacttctaccatgcatagatagagatcctcga |
33412 |
T |
|
| Q |
185 |
caccgcgttgttttgctgctt |
205 |
Q |
| |
|
| || ||| |||||||||||| |
|
|
| T |
33411 |
ccccacgtcgttttgctgctt |
33391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 21826 - 21734
Alignment:
| Q |
114 |
cacaagtgtttcacacacgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttc |
206 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||| |||||| ||||| | ||||||||||||||| || || ||| |||||||| |||| |
|
|
| T |
21826 |
cacaagtgttctacaaacgaaaatggtaggcgacaaggtcacttctaacaagtttagatagagatcctcgaccccacgtcgttttgcttcttc |
21734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 19970209 - 19970313
Alignment:
| Q |
39 |
aagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacacacgaaaatg |
138 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| | ||| |||||| | ||||| || ||| |||||| || ||||||||||||||||| ||||||| |
|
|
| T |
19970209 |
aagggttttgagcgaaggaagatcaacagaagaacgaaacatagttgttacatgtatgctaaacaatttcagaaccacaagtgtttcacagcagaaaatg |
19970308 |
T |
|
| Q |
139 |
gtagg |
143 |
Q |
| |
|
||||| |
|
|
| T |
19970309 |
gtagg |
19970313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University