View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_29 (Length: 398)
Name: NF10092A_low_29
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_29 |
 | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0007 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 149698 - 149871
Alignment:
| Q |
15 |
catcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
149698 |
catcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttt |
149797 |
T |
|
| Q |
115 |
tgaaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
149798 |
tgaaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
149871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 149988 - 150062
Alignment:
| Q |
305 |
ttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaatgccttgtcaagaaggaaat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
149988 |
ttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaatgccttgtcaagaaggaaat |
150062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University