View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_292 (Length: 230)
Name: NF10092A_low_292
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_292 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17701153 - 17700927
Alignment:
| Q |
1 |
gatcatgatgtgaataatggcggcgccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccattatcatgatgatgatggga |
100 |
Q |
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| T |
17701153 |
gatcatgatgtgaataacggcggcaccttgaagaagactataaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatg---gga |
17701057 |
T |
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| Q |
101 |
aaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaa |
200 |
Q |
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| T |
17701056 |
aaccgaagaaccatacatgtgatgtttgtaacaaggtatttttatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaa |
17700957 |
T |
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| Q |
201 |
gggtactattattcactcaccgactgccca |
230 |
Q |
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| T |
17700956 |
gggtactattattcactcaccgactgccca |
17700927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17662926 - 17663151
Alignment:
| Q |
1 |
gatcatgatgtgaataatggcggcgccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccattatcatgatgatgatggga |
100 |
Q |
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| T |
17662926 |
gatcatgatgtgaataacggcggcaccttgaagaagactacaaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatt---gga |
17663022 |
T |
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| Q |
101 |
aaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaa |
200 |
Q |
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| T |
17663023 |
aaccgaagaaccatacaagtgatgtttgtcacaaggtattttcatccaacactgctttgaagggacatatgagatggcatactccaaagggtttgaagaa |
17663122 |
T |
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| Q |
201 |
gggtactattattcactcaccgactgccc |
229 |
Q |
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| T |
17663123 |
ggatactattattccctcactgactgccc |
17663151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 21900125 - 21899954
Alignment:
| Q |
55 |
gttttttcttcttctcttcacaaccattatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatg |
154 |
Q |
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| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaacaaggttttttcgtccaacaatg |
21900029 |
T |
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| Q |
155 |
ctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgccc |
229 |
Q |
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| T |
21900028 |
ctttgaacgggcatatgagatggcatactcaaaagggttcgaagaatggtgttattaaccacccaccgactgccc |
21899954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 38227637 - 38227577
Alignment:
| Q |
116 |
catgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatg |
176 |
Q |
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| T |
38227637 |
catgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatg |
38227577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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