View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_295 (Length: 230)
Name: NF10092A_low_295
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_295 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31251930 - 31252154
Alignment:
| Q |
1 |
acaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtga |
100 |
Q |
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| T |
31251930 |
acaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtga |
31252029 |
T |
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| Q |
101 |
ttttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaa |
200 |
Q |
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| T |
31252030 |
ttttatacatggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatcagggccaacattaa |
31252129 |
T |
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| Q |
201 |
tttgtgatgcaggagagatggattt |
225 |
Q |
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| T |
31252130 |
tttgtgatgcaggagagatggattt |
31252154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25815213 - 25814990
Alignment:
| Q |
1 |
acaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtga |
100 |
Q |
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| T |
25815213 |
acaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggggtca |
25815114 |
T |
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| Q |
101 |
ttttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaa |
200 |
Q |
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| T |
25815113 |
ttttatacatggtaatgaaatgagataagaatcaa-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacattaa |
25815015 |
T |
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| Q |
201 |
tttgtgatgcaggagagatggattt |
225 |
Q |
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| T |
25815014 |
tttgtaatgcaagagagatggattt |
25814990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 23052912 - 23052768
Alignment:
| Q |
81 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
180 |
Q |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
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| Q |
181 |
attatcagggccaacattaatttgtgatgcaggagagatggattt |
225 |
Q |
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| T |
23052812 |
tttatcagaaccaacattaatatgtgatgcaggagagatggattt |
23052768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 23052956 - 23052912
Alignment:
| Q |
5 |
aagtggtgatttattaggggtagcattccaaaactgcataaaactt |
50 |
Q |
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| T |
23052956 |
aagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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