View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_299 (Length: 230)
Name: NF10092A_low_299
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_299 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 11860139 - 11860330
Alignment:
| Q |
21 |
ttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaa |
120 |
Q |
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| T |
11860139 |
ttcagaaagcaaagaaactaaggacctttcttttgccatacaacattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaacttgtgataa |
11860238 |
T |
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| Q |
121 |
gatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
212 |
Q |
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| T |
11860239 |
gatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
11860330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 11828004 - 11828195
Alignment:
| Q |
21 |
ttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaa |
120 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||| || |
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| T |
11828004 |
ttcagacagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgtgataa |
11828103 |
T |
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| Q |
121 |
gatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
212 |
Q |
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| T |
11828104 |
gatcttcgacaccttcaagtactcgctacgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgtgaagt |
11828195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 11902410 - 11902227
Alignment:
| Q |
26 |
aaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatct |
125 |
Q |
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|||||||||||||| || |||||||||||||| |||| || ||||||||||| ||||| || ||||| ||| ||||||||||||| || || ||||||| |
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| T |
11902410 |
aaagcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatct |
11902311 |
T |
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| Q |
126 |
tcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
212 |
Q |
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| T |
11902310 |
tcaacaccttcaag---tccctacgtgtgctggatctacatgacttggggattaagatggttccaacatctattgaggaggtgaagt |
11902227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 12038910 - 12039095
Alignment:
| Q |
24 |
agaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagat |
123 |
Q |
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||||||| || ||||| ||||||||||||||||||||||||| | ||||||||| |||||| | |||||| || ||||||||||||| ||||| ||||| |
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| T |
12038910 |
agaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtgataagat |
12039009 |
T |
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| Q |
124 |
cttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
212 |
Q |
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||| |||||||||| ||| | |||||||| ||| | ||||| ||||||||||||||| |||||||||||||||| || ||||||| |
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| T |
12039010 |
ctttaacaccttcaa-agct--atgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagt |
12039095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 11731791 - 11731967
Alignment:
| Q |
28 |
agcaaagaaactaaggaccattcttttgccatacaa---cattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatc |
124 |
Q |
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| T |
11731791 |
agcaaagaaactgaggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatc |
11731890 |
T |
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| Q |
125 |
ttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgagga |
204 |
Q |
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| T |
11731891 |
ttcaacaccttcaag---tccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgagga |
11731967 |
T |
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