View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_3 (Length: 614)

Name: NF10092A_low_3
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_3
NF10092A_low_3
[»] chr1 (7 HSPs)
chr1 (26-200)||(36614155-36614329)
chr1 (401-590)||(36616422-36616611)
chr1 (199-353)||(36616271-36616425)
chr1 (301-407)||(13016465-13016574)
chr1 (301-393)||(47323190-47323284)
chr1 (518-586)||(291084-291152)
chr1 (498-557)||(13016653-13016713)
[»] chr7 (2 HSPs)
chr7 (333-407)||(41455519-41455596)
chr7 (352-407)||(41451858-41451914)
[»] chr3 (5 HSPs)
chr3 (333-407)||(28703820-28703897)
chr3 (361-407)||(32893893-32893939)
chr3 (505-556)||(36612249-36612301)
chr3 (513-571)||(28704007-28704065)
chr3 (518-580)||(32894053-32894115)
[»] chr2 (5 HSPs)
chr2 (321-391)||(14636551-14636622)
chr2 (363-407)||(8363183-8363227)
chr2 (518-580)||(33357729-33357791)
chr2 (361-407)||(33357904-33357950)
chr2 (513-579)||(8363004-8363070)
[»] chr8 (2 HSPs)
chr8 (498-557)||(43653870-43653930)
chr8 (320-384)||(43658839-43658906)
[»] chr6 (2 HSPs)
chr6 (318-381)||(27074911-27074974)
chr6 (318-351)||(27078305-27078338)
[»] chr5 (1 HSPs)
chr5 (318-351)||(26049974-26050007)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 36614155 - 36614329
Alignment:
Q  26 tatctgagtaacacaatcaagttgagtgaacaagaataatttattgtaagcaatcatgaatggaaataacaattcaatgtgaatcttccaattaattctt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  36614155 tatctgagtaacacaatcaagttgagtgaacaagaataatttattgtaagcaatcatgaatagaaacaacaattcaatgtgaatcttccaattaattctt 36614254  T
Q  126 gatggaggtaattaggaaaaatgtagagaattgatgaagacattgtttggagcacaaaaagtgcaagaagttgtg 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  36614255 gatggaggtaattaggaaaaatgtagagcattgatgaagacattgtttggagcataaaaagtgcaagaagttgtg 36614329  T

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Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 401 - 590
Target Start/End: Original strand, 36616422 - 36616611
Alignment:
Q  401 agaagtaattttgaataatggtaataactctcttctttttcacgtaataaaaatttggttttataaaggtaatatgctgaaagacattacacacgtttt- 499  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  36616422 agaagtaattt-gaataatggtaataactctcttctttttcaggtaataaaaatttggttttataaaggtaatatgctgagagacattacacacgttttt 36616520  T
Q  500 tctttttccactcaatgcaagtggatgttattaattaggtaagtgaagattgaccaaaaccagttgctaaaataatggcaaaactctgaat 590  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36616521 tctttttccactcaatgcaagtggatgctattaattaggtaaatgaagattgaccaaaaccagttgctaaaataatggcaaaactctgaat 36616611  T

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Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 36616271 - 36616425
Alignment:
Q  199 tgtagaatgggtatgaagaacttgatgcaatttcattagatactcgagttttgaaggcttatgatgctttgttttatatccagcaaggtattgatttccg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  ||    
T  36616271 tgtagaatgggtatgaagaacttgatgcaatttcattagatactcgagttttgaaggcttatgatgctttgttttatatcctgcaagttattgattctcg 36616370  T
Q  299 tatacaacatgttctttttggcggtaagcgtactgaggctatcaagacacgagaa 353  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  36616371 tatacaacatgttcttcttggcggtaagcgtactgaagctatcaagacacgagaa 36616425  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 13016465 - 13016574
Alignment:
Q  301 tacaacatgttctttttggcggtaagcgtactgaggctatcaagacacgag--aaatacac-aactcaatgactcaggcacttagtatttttgtaacacc 397  Q
    ||||||| |||||| | |||||||||||||| ||| |||||| ||||||||  |||||||| |||||||||||| || |  |||||| |||||||||||     
T  13016465 tacaacaggttcttctcggcggtaagcgtacggagactatcaggacacgagaaaaatacacaaactcaatgactgagacttttagtaattttgtaacact 13016564  T
Q  398 gaaagaagta 407  Q
     |||||||||    
T  13016565 taaagaagta 13016574  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 47323284 - 47323190
Alignment:
Q  301 tacaacatgttctttttggcggtaagcgtactgaggctatcaagacacgagaaatacacaa-ctca-atgactcaggcacttagtatttttgtaa 393  Q
    |||||||||||||| | ||||||||||||||    ||||||| ||||||| |||||||||  |||| ||||||||| ||||||||||||||||||    
T  47323284 tacaacatgttcttctcggcggtaagcgtacccgagctatcaggacacgaaaaatacacaggctcagatgactcagacacttagtatttttgtaa 47323190  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 586
Target Start/End: Complemental strand, 291152 - 291084
Alignment:
Q  518 aagtggatgttattaattaggtaagtgaagattgaccaaaaccagttgctaaaataatggcaaaactct 586  Q
    ||||||||| || |||||||||||||| ||||||||||||| | ||||| ||||| ||||||| |||||    
T  291152 aagtggatgctactaattaggtaagtggagattgaccaaaatctgttgccaaaatgatggcaagactct 291084  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 557
Target Start/End: Original strand, 13016653 - 13016713
Alignment:
Q  498 tttctttttccactcaa-tgcaagtggatgttattaattaggtaagtgaagattgaccaaa 557  Q
    |||||| |||||||||| || ||||||||| |||||||||||||||||  |||||||||||    
T  13016653 tttcttattccactcaaatgtaagtggatgctattaattaggtaagtggggattgaccaaa 13016713  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 41455519 - 41455596
Alignment:
Q  333 gaggctatcaagacacgagaaa--tacaca-actcaatgactcaggcacttagtatttttgtaacaccgaaagaagta 407  Q
    |||||||||| |||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  41455519 gaggctatcaggacacgagaaaaatacacagactcaatgactcaggcacttagtatttttgtaacactgaaagaagta 41455596  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 407
Target Start/End: Original strand, 41451858 - 41451914
Alignment:
Q  352 aaatacaca-actcaatgactcaggcacttagtatttttgtaacaccgaaagaagta 407  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  41451858 aaatacacagactcaacgactcagacacttagtatttttgtaacactgaaagaagta 41451914  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 28703820 - 28703897
Alignment:
Q  333 gaggctatcaagacacgagaaa--tacaca-actcaatgactcaggcacttagtatttttgtaacaccgaaagaagta 407  Q
    |||||||||| |||||||||||  |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  28703820 gaggctatcaggacacgagaaaaatacacagactcaatgattcaggcacttagtatttttgtaacactgaaagaagta 28703897  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 32893893 - 32893939
Alignment:
Q  361 actcaatgactcaggcacttagtatttttgtaacaccgaaagaagta 407  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  32893893 actcaatcactcagacacttagtatttttgtaacactgaaagaagta 32893939  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 556
Target Start/End: Original strand, 36612249 - 36612301
Alignment:
Q  505 ttccactcaa-tgcaagtggatgttattaattaggtaagtgaagattgaccaa 556  Q
    |||||||||| |||||||||||  ||||||||||||||||| |||||||||||    
T  36612249 ttccactcaaatgcaagtggattctattaattaggtaagtggagattgaccaa 36612301  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 571
Target Start/End: Original strand, 28704007 - 28704065
Alignment:
Q  513 aatgcaagtggatgttattaattaggtaagtgaagattgaccaaaaccagttgctaaaa 571  Q
    |||| ||||||||| || ||||||||||||||| |||||| ||||| ||||||| ||||    
T  28704007 aatgtaagtggatgctactaattaggtaagtgaggattgaacaaaaacagttgcaaaaa 28704065  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 580
Target Start/End: Original strand, 32894053 - 32894115
Alignment:
Q  518 aagtggatgttattaattaggtaagtgaagattgaccaaaaccagttgctaaaataatggcaa 580  Q
    ||||||||| || ||||||||||||||   ||||||||||| ||||||| ||||| |||||||    
T  32894053 aagtggatgctactaattaggtaagtgggtattgaccaaaaacagttgcaaaaatgatggcaa 32894115  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 14636551 - 14636622
Alignment:
Q  321 ggtaagcgtactgaggctatcaagacacgagaaatacacaa-ctcaatgactcaggcacttagtatttttgt 391  Q
    |||||||||| |||| ||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||    
T  14636551 ggtaagcgtagtgagactatcaagacacgaataatacacaaactcaatgactcaggcacttagtaattttgt 14636622  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 8363227 - 8363183
Alignment:
Q  363 tcaatgactcaggcacttagtatttttgtaacaccgaaagaagta 407  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  8363227 tcaatgactcaagcacttagtatttttgtaacaccgaaagaagta 8363183  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 580
Target Start/End: Complemental strand, 33357791 - 33357729
Alignment:
Q  518 aagtggatgttattaattaggtaagtgaagattgaccaaaaccagttgctaaaataatggcaa 580  Q
    ||||||||| || ||||||||||||||  |||||||||||| ||||||| ||||| |||||||    
T  33357791 aagtggatgctactaattaggtaagtggggattgaccaaaaacagttgcaaaaatgatggcaa 33357729  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 33357950 - 33357904
Alignment:
Q  361 actcaatgactcaggcacttagtatttttgtaacaccgaaagaagta 407  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||||    
T  33357950 actcaatcactcagacacttaatatttttgtaacaccgaaagaagta 33357904  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 579
Target Start/End: Complemental strand, 8363070 - 8363004
Alignment:
Q  513 aatgcaagtggatgttattaattaggtaagtgaagattgaccaaaaccagttgctaaaataatggca 579  Q
    |||| ||||||||| || ||||||||||||||  |||||||||||| ||||||| ||| | ||||||    
T  8363070 aatgtaagtggatgctactaattaggtaagtggggattgaccaaaaacagttgcaaaagtgatggca 8363004  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 557
Target Start/End: Complemental strand, 43653930 - 43653870
Alignment:
Q  498 tttctttttccactcaa-tgcaagtggatgttattaattaggtaagtgaagattgaccaaa 557  Q
    |||||| |||||||||| || ||||||||| |||||||||||||||||  |||||||||||    
T  43653930 tttcttattccactcaaatgtaagtggatgctattaattaggtaagtggggattgaccaaa 43653870  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 43658906 - 43658839
Alignment:
Q  320 cggtaagcgtactgaggctatcaagacacgag--aaatacaca-actcaatgactcaggcacttagta 384  Q
    |||||||||||| || ||||||| ||||||||  ||||||||| |||||||||||||||| |||||||    
T  43658906 cggtaagcgtaccgaagctatcaggacacgagaaaaatacacagactcaatgactcaggctcttagta 43658839  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 27074974 - 27074911
Alignment:
Q  318 ggcggtaagcgtactgaggctatcaagacacgagaaatacacaactca-atgactcaggcactta 381  Q
    |||||||||||||| ||||||||||||||||||| ||| || |||||| ||||||||| ||||||    
T  27074974 ggcggtaagcgtaccgaggctatcaagacacgagtaat-caaaactcagatgactcagacactta 27074911  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 27078338 - 27078305
Alignment:
Q  318 ggcggtaagcgtactgaggctatcaagacacgag 351  Q
    |||||||||||||| |||||||||||||||||||    
T  27078338 ggcggtaagcgtaccgaggctatcaagacacgag 27078305  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 26050007 - 26049974
Alignment:
Q  318 ggcggtaagcgtactgaggctatcaagacacgag 351  Q
    |||||||||||||| |||||||||||||||||||    
T  26050007 ggcggtaagcgtaccgaggctatcaagacacgag 26049974  T

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