View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_30 (Length: 398)
Name: NF10092A_low_30
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 25 - 313
Target Start/End: Original strand, 21662292 - 21662581
Alignment:
| Q |
25 |
gaatataacatgcataaaaaattgtataacctaaagaaaactgaatagtaaagtttgcaaagagaagagtagtttaccagcagcaatgatgagagagggg |
124 |
Q |
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| T |
21662292 |
gaatataacatgcatcaaaaattgtataacctaaagaaaactgaatagtaaagtctgcaaagagaagagtagtttaccagcagcaacgatgagagagggg |
21662391 |
T |
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| Q |
125 |
acaaatgggtgtagagaatggcaatgtttggtagtagtattatctaatagagtgtgttgattgattgataggtttaaaatggatatttgaaccaaaagtg |
224 |
Q |
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| T |
21662392 |
acgaatgggtgtagagaatgacaatgtttgctagtagtattatctaatagagtatgttgattgattgatagctgtaaaatggatatttgaaccaaaagtg |
21662491 |
T |
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| Q |
225 |
tactttataatctcgcacac-aaaatgggttcagtttagtttagttccaatgggatggataacttagataaatgtgtggataaagtaaac |
313 |
Q |
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| T |
21662492 |
tactttataatctcacacacaaaaatgggttcagttttgtttagttccaatggaatgggtaacttagataaatgtgtggataaagtaaac |
21662581 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 27134937 - 27134987
Alignment:
| Q |
171 |
atagagtgtgttgattgattgataggtttaaaatggatatttgaaccaaaa |
221 |
Q |
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| T |
27134937 |
atagagtatgttgattgattgctagctgttaaatggatatttgaaccaaaa |
27134987 |
T |
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