View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_301 (Length: 230)
Name: NF10092A_low_301
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_301 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36929405 - 36929182
Alignment:
| Q |
1 |
ttaagcttgtgactaatcccacannnnnnnccttaatttctggggttttagcatcaatgtcataaacaaggtctttagttagttccatttgtggctgagg |
100 |
Q |
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| T |
36929405 |
ttaagcttgtgactaatcccacatttttttccttaatttctggggctttagcatcaatgtcataaacaaggtctttagttaggtccatttgtggcttagg |
36929306 |
T |
|
| Q |
101 |
cataggttggcctttatctaacttgattattgtaaccccagtttggctttgtgttagcttggtcacctcatctttattaaaattgtatactttgcttatt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36929305 |
cataggttggcctttttctaacttgattattgtaaccccagtttggctttgtgttagcttggtcacctcatctttattaaaattgtatactttgcttatt |
36929206 |
T |
|
| Q |
201 |
aattcactagaaaaacttcctaaa |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
36929205 |
aattcactagaaaaacttcctaaa |
36929182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 36921943 - 36921726
Alignment:
| Q |
1 |
ttaagcttgtgactaatcccacannnnnnnccttaatttctggggttttagcatcaatgtcataaacaaggtctttagttagttccatttgtggctgagg |
100 |
Q |
| |
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||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| || ||||| ||| |
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| T |
36921943 |
ttaaggttgtgactaaccccacattttgagccttaatttctggtgttttagcatcaatgtcataaacaaagtctttagttaggtccaattttggcttagg |
36921844 |
T |
|
| Q |
101 |
cataggttggcctttatctaacttgattattgtaaccccagtttggctttgtgttagcttggtcacctcatctttattaaaattgtatactttgcttatt |
200 |
Q |
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||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36921843 |
cataggttgacctttttctaacttgattataacaacccctttttggctttgtgttagcttggtcacctcatctttattaaaattgtatactttgcttatt |
36921744 |
T |
|
| Q |
201 |
aattcactagaaaaactt |
218 |
Q |
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|| |||||||| |||||| |
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| T |
36921743 |
aaatcactagagaaactt |
36921726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 29348775 - 29348619
Alignment:
| Q |
67 |
caaggtctttagttagttccatttgtggctgaggcataggttggcctttatctaacttgattattgtaaccccagtttggctttgtgttagcttggtcac |
166 |
Q |
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|||||||||||||||| ||||||||||||| |||||||| |||| | || |||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
29348775 |
caaggtctttagttaggtccatttgtggcttaggcatagattggtccttttctaacttgattatcgtaaccccagtttggctttgtgttagcttgttcac |
29348676 |
T |
|
| Q |
167 |
ctcatctttattaaaattgtatactttgcttattaattcactagaaaaacttcctaaa |
224 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29348675 |
ctcatcttaattaaaattgtatactttgcttatt-attcactagaaaaacttcctaaa |
29348619 |
T |
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