View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_308 (Length: 229)

Name: NF10092A_low_308
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_308
NF10092A_low_308
[»] chr6 (10 HSPs)
chr6 (10-218)||(26975517-26975725)
chr6 (14-218)||(26636212-26636416)
chr6 (14-218)||(26742178-26742382)
chr6 (10-218)||(26950309-26950517)
chr6 (10-218)||(26959692-26959900)
chr6 (10-194)||(27664613-27664797)
chr6 (10-217)||(26849279-26849486)
chr6 (13-218)||(25074436-25074638)
chr6 (103-211)||(31288878-31288986)
chr6 (10-66)||(31288986-31289042)
[»] chr2 (1 HSPs)
chr2 (13-218)||(17992626-17992831)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 26975725 - 26975517
Alignment:
Q  10 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  26975725 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag 26975626  T
Q  110 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 209  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26975625 atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattc 26975526  T
Q  210 atctctgtc 218  Q
    || ||||||    
T  26975525 atttctgtc 26975517  T

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Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 26636416 - 26636212
Alignment:
Q  14 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 113  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26636416 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26636317  T
Q  114 gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcatct 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  26636316 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcattt 26636217  T
Q  214 ctgtc 218  Q
    |||||    
T  26636216 ctgtc 26636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 26742382 - 26742178
Alignment:
Q  14 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 113  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26742382 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26742283  T
Q  114 gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcatct 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  26742282 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcattt 26742183  T
Q  214 ctgtc 218  Q
    |||||    
T  26742182 ctgtc 26742178  T

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Target: chr6; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 26950517 - 26950309
Alignment:
Q  10 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 109  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| |||||||||||||||||||    
T  26950517 agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag 26950418  T
Q  110 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950417 atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 26950318  T
Q  210 atctctgtc 218  Q
    || ||||||    
T  26950317 atttctgtc 26950309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 26959900 - 26959692
Alignment:
Q  10 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 109  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| ||||||| |||||||||||    
T  26959900 agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag 26959801  T
Q  110 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 209  Q
    ||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||    
T  26959800 atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaataaaatcacgttcatactc 26959701  T
Q  210 atctctgtc 218  Q
    || ||||||    
T  26959700 atttctgtc 26959692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 27664613 - 27664797
Alignment:
Q  10 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 109  Q
    ||||||||||||||||  || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||    
T  27664613 agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag 27664712  T
Q  110 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaa 194  Q
    ||| ||||||||| ||||| ||||||||||||| | ||    |||||||||||| |||||||||||||||||||| |||||||||    
T  27664713 attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaa 27664797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 26849486 - 26849279
Alignment:
Q  10 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 109  Q
    |||||||| || |||||||| ||||||||||||||||||||| |  ||||||||||| ||||  |||| ||||||||||| |||||||||||||||||||    
T  26849486 agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag 26849387  T
Q  110 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 209  Q
    |||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| ||  ||||||||||  ||||||||| | ||||||||||    
T  26849386 atttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcatattc 26849287  T
Q  210 atctctgt 217  Q
    || |||||    
T  26849286 atttctgt 26849279  T

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Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 25074638 - 25074436
Alignment:
Q  13 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 112  Q
    |||||||| |||||||| |||||||||| ||||||||||||| | |||||||   || | ||||||||||||||||| ||||||||||| |||||||||     
T  25074638 gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc 25074542  T
Q  113 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcatc 212  Q
      || ||||| |||||||||| |||||||| |||||  ||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||     
T  25074541 gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttcaataaaatcacgttcatattcatt 25074442  T
Q  213 tctgtc 218  Q
    ||||||    
T  25074441 tctgtc 25074436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 31288986 - 31288878
Alignment:
Q  103 attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt 202  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt 31288887  T
Q  203 catattcat 211  Q
    |||||||||    
T  31288886 catattcat 31288878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
Q  10 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca 66  Q
    |||||||| |||||| |||| ||||||||||| |||||||||||| |||||||||||    
T  31289042 agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca 31288986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 17992626 - 17992831
Alignment:
Q  13 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 112  Q
    |||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || |  |||||||||||||||| ||||||||||||||||||||||    
T  17992626 gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt 17992725  T
Q  113 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcatc 212  Q
    |||| ||||  |||||||| ||||||||||  ||||||||||| ||||||| |||   ||||||||||||||||||||||||||| |||||||||||||     
T  17992726 tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgttcatattcatt 17992825  T
Q  213 tctgtc 218  Q
    ||||||    
T  17992826 tctgtc 17992831  T

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