View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_310 (Length: 229)

Name: NF10092A_low_310
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_310
NF10092A_low_310
[»] chr3 (2 HSPs)
chr3 (9-223)||(54877628-54877837)
chr3 (139-196)||(48444584-48444641)
[»] chr7 (1 HSPs)
chr7 (139-191)||(37334878-37334930)
[»] chr6 (1 HSPs)
chr6 (150-197)||(33590285-33590332)
[»] chr8 (4 HSPs)
chr8 (149-191)||(39405144-39405186)
chr8 (140-197)||(22330768-22330825)
chr8 (141-197)||(14581705-14581761)
chr8 (1-132)||(32411954-32412085)
[»] chr5 (2 HSPs)
chr5 (151-197)||(9621898-9621944)
chr5 (148-197)||(29799715-29799764)
[»] chr4 (1 HSPs)
chr4 (148-197)||(21443100-21443149)
[»] chr1 (3 HSPs)
chr1 (148-197)||(30543317-30543366)
chr1 (149-198)||(33854794-33854843)
chr1 (149-198)||(33926079-33926128)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 54877628 - 54877837
Alignment:
Q  9 agtcaaggcgtactcatgtgtggtgatccgacagggcttcacgtgctctatcgtcgtattttaccatgttttgtcttgggatttggcttaatgggccttg 108  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||     ||||||||||||||||||||||    
T  54877628 agtcaaggcatactcatgtgcggtgatccgacagggcttcacgagctctattgtcgtattttaccatgttttg-----ggatttggcttaatgggccttg 54877722  T
Q  109 ctcttgtaggtttctagccggtcctgaacatttataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttgaaacccattaatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54877723 ctcttgtaggtttctagccggtcctgaacatttataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttgaaacccattaatg 54877822  T
Q  209 cttagataatttgac 223  Q
    ||||||| |||||||    
T  54877823 cttagatgatttgac 54877837  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 48444641 - 48444584
Alignment:
Q  139 tttataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttga 196  Q
    ||||| || ||||||||||||||||||||||| | |||| |||||| |||||| ||||    
T  48444641 tttatgattaatatatttttaattttaaaaatattataacaatatatattaaatttga 48444584  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 37334878 - 37334930
Alignment:
Q  139 tttataatcaatatatttttaattttaaaaatgtcataataatatagattaaa 191  Q
    ||||| || |||| |||||||||||||||||| | ||||||||||||||||||    
T  37334878 tttatgattaataaatttttaattttaaaaatattataataatatagattaaa 37334930  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 33590285 - 33590332
Alignment:
Q  150 tatatttttaattttaaaaatgtcataataatatagattaaagttgaa 197  Q
    ||||||||||||||||||||| | ||||||| |||||||||| |||||    
T  33590285 tatatttttaattttaaaaatattataataacatagattaaatttgaa 33590332  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 39405186 - 39405144
Alignment:
Q  149 atatatttttaattttaaaaatgtcataataatatagattaaa 191  Q
    |||||||||||||||||||||| | ||||||||| ||||||||    
T  39405186 atatatttttaattttaaaaatattataataataaagattaaa 39405144  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 22330825 - 22330768
Alignment:
Q  140 ttataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 197  Q
    ||||||| ||||||||||||||||||||||| | || | || |||||||||| |||||    
T  22330825 ttataattaatatatttttaattttaaaaatattatcacaacatagattaaatttgaa 22330768  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 14581705 - 14581761
Alignment:
Q  141 tataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 197  Q
    |||||| | |||||||||||||||||||||   ||||||| |||||||||| |||||    
T  14581705 tataattactatatttttaattttaaaaataatataataacatagattaaaattgaa 14581761  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 32411954 - 32412085
Alignment:
Q  1 ggagatgtagtcaaggcgtactcatgtgtggtgatccg-acagggcttcacgtgctctatcgtcgtattttaccatgttttgtcttgggatttggcttaa 99  Q
    ||||||| |||||||| |||||| | |||||||||||  |||||  |||  ||||||| ||  |||||||| || ||||| |||||||| ||||||||||    
T  32411954 ggagatggagtcaaggtgtactcctatgtggtgatccacacaggaattcgtgtgctctttcaccgtatttttccttgttt-gtcttgggctttggcttaa 32412052  T
Q  100 tgggccttgctcttgtaggtttctagccggtcc 132  Q
     | |||||||| |  |||| |||||| ||||||    
T  32412053 agagccttgctttattaggcttctagacggtcc 32412085  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 9621898 - 9621944
Alignment:
Q  151 atatttttaattttaaaaatgtcataataatatagattaaagttgaa 197  Q
    |||||||||||||||||||| | |||| ||||||||||||| |||||    
T  9621898 atatttttaattttaaaaatattataacaatatagattaaatttgaa 9621944  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 29799764 - 29799715
Alignment:
Q  148 aatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 197  Q
    ||||||||||||||||||||||| | ||||||| ||| |||||| |||||    
T  29799764 aatatatttttaattttaaaaatattataataacatatattaaatttgaa 29799715  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 21443149 - 21443100
Alignment:
Q  148 aatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 197  Q
    ||||||||||||||||| ||||| | ||||||||||| |||||| |||||    
T  21443149 aatatatttttaatttttaaaatattataataatatatattaaatttgaa 21443100  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 30543317 - 30543366
Alignment:
Q  148 aatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 197  Q
    ||||||||||||||||||| ||| ||||||  |||||||||||| |||||    
T  30543317 aatatatttttaattttaagaatatcataactatatagattaaatttgaa 30543366  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 33854794 - 33854843
Alignment:
Q  149 atatatttttaattttaaaaatgtcataataatatagattaaagttgaaa 198  Q
    ||||||||||||| |||||||| |||||| || |||||||||| ||||||    
T  33854794 atatatttttaatattaaaaatatcataacaacatagattaaatttgaaa 33854843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 33926128 - 33926079
Alignment:
Q  149 atatatttttaattttaaaaatgtcataataatatagattaaagttgaaa 198  Q
    ||||||||||||| |||||||| |||||| || |||||||||| ||||||    
T  33926128 atatatttttaatattaaaaatatcataacaacatagattaaatttgaaa 33926079  T

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