View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_333 (Length: 221)
Name: NF10092A_low_333
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_333 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 11696972 - 11696800
Alignment:
| Q |
26 |
aacagagacaacatcatctggtgccaaaccttcttcaatcatttctgagaaaactttaagagcttccttaccacgtccatgaatcgcaagaccagatatc |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696972 |
aacatagacaacatcatctggtgccaaaccttcttcaatcatttctgagaaaactttaagagcttccttaccacgtccatgaatcgcaagaccagatatc |
11696873 |
T |
|
| Q |
126 |
attacagtgtaagaaaatctattcttctccgacatattctcgaatacgcgtaaacctttctcaagacatccac |
198 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
11696872 |
attacagtgtaagaatatctattcttctccgacatatttttgaatacgcgtaaacctttctcaagacatccac |
11696800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University