View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_343 (Length: 217)
Name: NF10092A_low_343
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_343 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 13243869 - 13243654
Alignment:
| Q |
1 |
atcaagaaatggtaataggcaattctctagcttcttttgaatgttttgttgatagaatatctcaatgtttttggttttgagcaatgaatgaaatagtgcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
13243869 |
atcaagaaatggtaataggcaattctctagtttcttttgaatgttttgttgatagaatatctcaaagtttttggttttgagcaatgaatgaagtagtgcc |
13243770 |
T |
|
| Q |
101 |
ttttcttgtttccattcattggaatccaaattgaaaatacccacgccaaaaatttcaaaaatctcatggaaatcaaatcctttcccatagttacggaaat |
200 |
Q |
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||||||||| |||||| ||||||||||||||||||||||| || || | |||||||||||||||| |||||||| |||||||||||||||||| ||| | |
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| T |
13243769 |
ctttcttgttcccattccttggaatccaaattgaaaataccaacaccgagaatttcaaaaatctcaaggaaatcagatcctttcccatagttactgaatt |
13243670 |
T |
|
| Q |
201 |
tcttgctgaggatgtg |
216 |
Q |
| |
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| |||||||||||||| |
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| T |
13243669 |
ttttgctgaggatgtg |
13243654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 19278492 - 19278277
Alignment:
| Q |
1 |
atcaagaaatggtaataggcaattctctagcttcttttgaatgttttgttgatagaatatctcaatgtttttggttttgagcaatgaatgaaatagtgcc |
100 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19278492 |
atcaagaaatggtaacaaacaattctctagcttcttttgaatgttttgttgatagaatatctcaatgtttttgtttttgagcaatgaatgaaatagtgcc |
19278393 |
T |
|
| Q |
101 |
ttttcttgtttccattcattggaatccaaattgaaaatacccacgccaaaaatttcaaaaatctcatggaaatcaaatcctttcccatagttacggaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | || | || |||||||||||||||||| ||| |||||||||||||||||| ||||| |
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| T |
19278392 |
ctttcttgtttccattcattggaatccaaattgaaaataccaagaccgagaacttcaaaaatctcatggaagtcagatcctttcccatagttactgaaat |
19278293 |
T |
|
| Q |
201 |
tcttgctgaggatgtg |
216 |
Q |
| |
|
||||||||| |||||| |
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| T |
19278292 |
tcttgctgatgatgtg |
19278277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 13086984 - 13087190
Alignment:
| Q |
1 |
atcaagaaatggtaataggcaattctctagcttcttttgaatgttttgttgatagaatatctcaatgtttttggttttgagcaatgaatgaaatagtgcc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||| ||||| | |
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| T |
13086984 |
atcaagaaatcgtaataggaaattctctagcttcttttgaatgttttgttgaaaggatatctcaaaacttttccctttgagcaatgaatgaagtagtgtc |
13087083 |
T |
|
| Q |
101 |
ttttcttgtttccattcattggaatccaaattgaaaatacccacgccaaaaatttcaaaaatctcatggaaatcaaatcctttcccatagttacggaaat |
200 |
Q |
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| |||||||||||||| | | |||||||||| |||||||| || || |||| |||||||| |||||||||||| ||||||||||||||| | |||| |
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| T |
13087084 |
ctctcttgtttccattcttcgaaatccaaatttaaaataccaacacctaaaacatcaaaaatttcatggaaatcagttcctttcccatagttgctaaaat |
13087183 |
T |
|
| Q |
201 |
tcttgct |
207 |
Q |
| |
|
||||||| |
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| T |
13087184 |
tcttgct |
13087190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 13080210 - 13080004
Alignment:
| Q |
1 |
atcaagaaatggtaataggcaattctctagcttcttttgaatgttttgttgatagaatatctcaatgtttttggttttgagcaatgaatgaaatagtgcc |
100 |
Q |
| |
|
||||||||||||||||||| || |||||| ||| ||| |||| ||| ||| || |||||||| | |||| ||||||||||||||||||| | ||| |
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| T |
13080210 |
atcaagaaatggtaataggaaaatctctaacttatttctaatgcattgatgaaggagtatctcaaagcttttccttttgagcaatgaatgaaacaatgct |
13080111 |
T |
|
| Q |
101 |
ttttcttgtttccattcattggaatccaaattgaaaatacccacgccaaaaatttcaaaaatctcatggaaatcaaatcctttcccatagttacggaaat |
200 |
Q |
| |
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| ||||||||||||||||| ||||| |||||||||||||| || |||| |||||||||||| |||||||| ||| ||||||| |||||||| | ||||| |
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| T |
13080110 |
ctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatggaagtcagatccttttccatagttgctgaaat |
13080011 |
T |
|
| Q |
201 |
tcttgct |
207 |
Q |
| |
|
||||||| |
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|
| T |
13080010 |
tcttgct |
13080004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12963235 - 12963029
Alignment:
| Q |
1 |
atcaagaaatggtaataggcaattctctagcttcttttgaatgttttgttgatagaatatctcaatgtttttggttttgagcaatgaatgaaatagtgcc |
100 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| |||||||| | || ||| || |||| |||||||||||||||||| || || | |
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| T |
12963235 |
atcaagaaatggtaatagacaactctctagcttcttttgaatgatttgttgaagggatgtcttaaaacttttccttttgagcaatgaatgaagtattgtc |
12963136 |
T |
|
| Q |
101 |
ttttcttgtttccattcattggaatccaaattgaaaatacccacgccaaaaatttcaaaaatctcatggaaatcaaatcctttcccatagttacggaaat |
200 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| | || || | |||| || |||||| || ||| |||||||| ||||| ||||||| || | ||||| |
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| T |
12963135 |
ctctcttgtttccaatcattggaatccaaatttataagactaataccaagaacttcaaagatttcagggaaatcagatcctctcccataattgctgaaat |
12963036 |
T |
|
| Q |
201 |
tcttgct |
207 |
Q |
| |
|
||||||| |
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|
| T |
12963035 |
tcttgct |
12963029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 13272463 - 13272670
Alignment:
| Q |
1 |
atcaagaaatggtaataggcaattctctagcttcttttgaatgttttgttgatagaatatctcaatgtttttggttttgagcaatgaatgaaatagtgcc |
100 |
Q |
| |
|
|||||||||||||||||| ||| | ||||| |||||||||||||||||| || | || |||||| |||| | ||| ||||||||||||| | | | |
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|
| T |
13272463 |
atcaagaaatggtaatagacaactttctagtttcttttgaatgttttgtcgaagggatgtctcaaaagtttttgctttaagcaatgaatgaagaatagtc |
13272562 |
T |
|
| Q |
101 |
ttttcttgtttccattcattggaatccaaattgaaaatacccacgccaaaaatttcaaaaatctcatggaaatcaaatcctttcccatagttacggaaat |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| | ||||| || |||| || ||| |||| ||| |||||||| ||||||||||||| || | ||||| |
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| T |
13272563 |
ctttcttgcttccattcattggaatccagatttacaatactaacaccaagaacgtcacaaatttcagggaaatcagatcctttcccataattgctgaaat |
13272662 |
T |
|
| Q |
201 |
tcttgctg |
208 |
Q |
| |
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| |||||| |
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|
| T |
13272663 |
ttttgctg |
13272670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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