View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_359 (Length: 211)
Name: NF10092A_low_359
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_359 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 38453543 - 38453375
Alignment:
| Q |
22 |
tacgagggttgcatatgctcaaatggaaaagtgatagagaaaggactgatgatatggggccttcaaaatcccgatggagattgtatatgtcctgattcct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38453543 |
tacgagggttgcatatgctcaaatggaaaagtgatagagaaaagactgatgatatgaggccttcaaaatcccgatggagattgtatatgtcctgattcct |
38453444 |
T |
|
| Q |
122 |
catctggtgtgattctttctgttatcgaaagggaatatatgcaaagagttctgattgtggagaaaatta |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38453443 |
catctggtgtgattctttctgttatcgaaatggaatatatgcaaagagttctgattgtggagaaaatta |
38453375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 38633358 - 38633405
Alignment:
| Q |
143 |
ttatcgaaagggaatatatgcaaagagttctgattgtggagaaaatta |
190 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
38633358 |
ttatcgaaagggaatgtatgcaaggagttctaattgtggagaaaatta |
38633405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 39849066 - 39849112
Alignment:
| Q |
142 |
gttatcgaaagggaatatatgcaaagagttctgattgtggagaaaat |
188 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
39849066 |
gttatcaaaagggaatatatgcaaggagttttaattgtggagaaaat |
39849112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 38633263 - 38633296
Alignment:
| Q |
66 |
actgatgatatggggccttcaaaatcccgatgga |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
38633263 |
actgatgatatgggcccttcaaaatcccgatgga |
38633296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 36951895 - 36951931
Alignment:
| Q |
148 |
gaaagggaatatatgcaaagagttctgattgtggaga |
184 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
36951895 |
gaaagggaatatatgcaaggagttctaattgtggaga |
36951931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 44474801 - 44474909
Alignment:
| Q |
26 |
agggttgcatatgctcaaatggaaaagtgatagagaaaggactgatgatatggggccttcaaaatcccgatggagattgtatatgtcctgattcctcatc |
125 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| || | ||| |||||| |
|
|
| T |
44474801 |
agggttgcatatgctcaaatgaaaaagtgatagagaaaggactgatgatatggagccttcaaaatcctaatggaggttgtatatatcataattgctcatc |
44474900 |
T |
|
| Q |
126 |
tggtgtgat |
134 |
Q |
| |
|
||||||||| |
|
|
| T |
44474901 |
tggtgtgat |
44474909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 7045729 - 7045679
Alignment:
| Q |
48 |
aaaagtgatagagaaaggactgatgatatggggccttcaaaatcccgatgg |
98 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| ||||||||| ||||| |
|
|
| T |
7045729 |
aaaagtgatagagaaaggactaatgatatggagccctcaaaatcctgatgg |
7045679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University