View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_368 (Length: 207)

Name: NF10092A_low_368
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_368
NF10092A_low_368
[»] chr4 (10 HSPs)
chr4 (16-207)||(5998674-5998865)
chr4 (40-74)||(21344848-21344882)
chr4 (40-74)||(37980158-37980192)
chr4 (40-74)||(38206136-38206170)
chr4 (40-74)||(56409982-56410016)
chr4 (42-74)||(31141356-31141388)
chr4 (43-74)||(29195126-29195157)
chr4 (40-75)||(37492728-37492763)
chr4 (40-74)||(25434669-25434703)
chr4 (40-74)||(42281244-42281278)
[»] chr1 (16 HSPs)
chr1 (33-74)||(19480558-19480599)
chr1 (26-74)||(47360510-47360558)
chr1 (40-74)||(37047016-37047050)
chr1 (28-70)||(45232096-45232138)
chr1 (16-70)||(49101755-49101809)
chr1 (41-74)||(38939233-38939266)
chr1 (35-74)||(44486163-44486202)
chr1 (40-74)||(6127997-6128031)
chr1 (40-74)||(15581152-15581186)
chr1 (40-74)||(24217002-24217036)
chr1 (20-74)||(33689878-33689932)
chr1 (40-74)||(39714789-39714823)
chr1 (40-70)||(39964540-39964570)
chr1 (40-74)||(44417472-44417506)
chr1 (41-74)||(9926288-9926321)
chr1 (42-74)||(39012322-39012354)
[»] chr8 (9 HSPs)
chr8 (27-74)||(22779686-22779733)
chr8 (40-74)||(40136973-40137007)
chr8 (41-74)||(5438450-5438483)
chr8 (40-74)||(9126594-9126628)
chr8 (40-74)||(22268944-22268978)
chr8 (40-74)||(34639345-34639379)
chr8 (41-74)||(1458404-1458437)
chr8 (41-74)||(2428111-2428144)
chr8 (26-70)||(29695324-29695368)
[»] chr6 (7 HSPs)
chr6 (40-74)||(6384013-6384047)
chr6 (40-70)||(6691561-6691591)
chr6 (16-74)||(9208276-9208334)
chr6 (40-74)||(17149595-17149629)
chr6 (116-154)||(31523230-31523268)
chr6 (41-74)||(22683-22716)
chr6 (40-73)||(28741980-28742013)
[»] chr5 (6 HSPs)
chr5 (40-74)||(15485430-15485464)
chr5 (28-74)||(32340335-32340381)
chr5 (41-74)||(5943893-5943926)
chr5 (40-70)||(16172994-16173024)
chr5 (40-74)||(17648979-17649013)
chr5 (42-74)||(31669037-31669069)
[»] chr3 (9 HSPs)
chr3 (40-74)||(35623277-35623311)
chr3 (40-74)||(42799758-42799792)
chr3 (42-74)||(18316511-18316543)
chr3 (42-74)||(53863880-53863912)
chr3 (40-74)||(31714348-31714382)
chr3 (40-70)||(34844406-34844436)
chr3 (44-73)||(37944812-37944841)
chr3 (40-73)||(40777045-40777078)
chr3 (42-74)||(42430365-42430397)
[»] chr2 (9 HSPs)
chr2 (40-74)||(6099529-6099563)
chr2 (16-74)||(26176312-26176370)
chr2 (40-74)||(43963999-43964033)
chr2 (40-74)||(7250260-7250294)
chr2 (40-74)||(8192490-8192524)
chr2 (40-74)||(18825372-18825406)
chr2 (40-74)||(26482124-26482158)
chr2 (41-74)||(3697411-3697444)
chr2 (41-74)||(25384567-25384600)
[»] chr7 (6 HSPs)
chr7 (26-70)||(21050137-21050181)
chr7 (42-74)||(25956305-25956337)
chr7 (43-74)||(23637029-23637060)
chr7 (16-70)||(21035155-21035209)
chr7 (40-74)||(22696348-22696382)
chr7 (41-71)||(46279048-46279078)
[»] scaffold0024 (1 HSPs)
scaffold0024 (128-202)||(18124-18198)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 5998674 - 5998865
Alignment:
Q  16 attggcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtcccaactcccaagcttgcacactccaaggtttacaaactaacatgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5998674 attggcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtcccaactcccaagcttgcacactccaaggtttacaaactaacatgt 5998773  T
Q  116 tatgaaacacggacactgacaccagacacgacgctgacatgtcgacgccagtaaaattccaagaaaacaacataattcaatgcaatcataag 207  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5998774 tatgaaacacggacactgacaccagacacgacactgacatgtcgacgccagtaaaattccaagaaaataacataattcaatgcaatcataag 5998865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 21344882 - 21344848
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  21344882 tgagaccttgagaggagcacactccaaggtcccaa 21344848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 37980158 - 37980192
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  37980158 tgagaccttgagaggagcacactccaaggtcccaa 37980192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 38206136 - 38206170
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  38206136 tgagaccttgagaggagcacactccaaggtcccaa 38206170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 56410016 - 56409982
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  56410016 tgagaccttgagaggagcacactccaaggtcccaa 56409982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 31141356 - 31141388
Alignment:
Q  42 agaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||    
T  31141356 agaccttgagaggagcacactccaaggtcccaa 31141388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 29195157 - 29195126
Alignment:
Q  43 gaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||||||||||    
T  29195157 gaccttgagaggagcacactccaaggtcccaa 29195126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 37492728 - 37492763
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaac 75  Q
    |||||||||||||||| |||||||||||||||||||    
T  37492728 tgagaccttgagaggatcacactccaaggtcccaac 37492763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 25434669 - 25434703
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||| ||||||||||||||||||||    
T  25434669 tgagaccttgagagaagcacactccaaggtcccaa 25434703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 42281244 - 42281278
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||| |||||||||||    
T  42281244 tgagaccttgagaggagcacactacaaggtcccaa 42281278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 19480599 - 19480558
Alignment:
Q  33 tcgaatgtgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  19480599 tcgaatgtgagaccttgagaggagcacactccaagatcccaa 19480558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 47360510 - 47360558
Alignment:
Q  26 ggaggattcgaatgtgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  47360510 ggaggattcgaacctgagatcttgagaggagcacactccaaggtcccaa 47360558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 37047050 - 37047016
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  37047050 tgagaccttgagaggagcacactccaaggtcccaa 37047016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 45232138 - 45232096
Alignment:
Q  28 aggattcgaatgtgagaccttgagaggagcacactccaaggtc 70  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
T  45232138 aggattcgaatatgagaccttgagaggagcgcactccaaggtc 45232096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 49101755 - 49101809
Alignment:
Q  16 attggcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtc 70  Q
    |||||||| ||| ||| || ||||| |||||||||||||||||||||||||||||    
T  49101755 attggcaccagggggaatcaaatgtaagaccttgagaggagcacactccaaggtc 49101809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 38939266 - 38939233
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||||||||||||    
T  38939266 gagaccttgagaggagcacactccaaggtcccaa 38939233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 44486163 - 44486202
Alignment:
Q  35 gaatgtgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  44486163 gaatttgagaccttgagaggagcacactccaaggttccaa 44486202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 6127997 - 6128031
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||| ||||||||||||||    
T  6127997 tgagaccttgagaggagcacgctccaaggtcccaa 6128031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 15581152 - 15581186
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||| |||||||||||||||||||||||||    
T  15581152 tgagacctttagaggagcacactccaaggtcccaa 15581186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 24217036 - 24217002
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||| ||||||    
T  24217036 tgagaccttgagaggagcacactccaagatcccaa 24217002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 33689932 - 33689878
Alignment:
Q  20 gcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||| ||||| |||||||  |||||||||| |||| |||||||||||||||||||    
T  33689932 gcaccaggagtattcgaaactgagaccttgtgaggtgcacactccaaggtcccaa 33689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 39714789 - 39714823
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||| ||||||    
T  39714789 tgagaccttgagaggagcacactccaagatcccaa 39714823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 39964570 - 39964540
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtc 70  Q
    |||||||||||||||||||||||||||||||    
T  39964570 tgagaccttgagaggagcacactccaaggtc 39964540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 44417472 - 44417506
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||| ||||||||||||||||||||    
T  44417472 tgagaccttgagagcagcacactccaaggtcccaa 44417506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 9926288 - 9926321
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||||| ||||||    
T  9926288 gagaccttgagaggagcacactccaagatcccaa 9926321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 39012354 - 39012322
Alignment:
Q  42 agaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||| |||||||||||||||||||||    
T  39012354 agaccttgagaagagcacactccaaggtcccaa 39012322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 22779733 - 22779686
Alignment:
Q  27 gaggattcgaatgtgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||||    
T  22779733 gaggattcgaacctgagaccttgagaggagcacattccaaggtcccaa 22779686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 40136973 - 40137007
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  40136973 tgagaccttgagaggagcacactccaaggtcccaa 40137007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 5438450 - 5438483
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||||||||||||    
T  5438450 gagaccttgagaggagcacactccaaggtcccaa 5438483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 9126594 - 9126628
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||| ||||||||||||||||||||||||||||||    
T  9126594 tgagtccttgagaggagcacactccaaggtcccaa 9126628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 22268944 - 22268978
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||| |||||||||||||||||||||    
T  22268944 tgagaccttgagaagagcacactccaaggtcccaa 22268978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 34639345 - 34639379
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||| ||||||    
T  34639345 tgagaccttgagaggagcacactccaagatcccaa 34639379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 1458437 - 1458404
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||| |||||||||||||||    
T  1458437 gagaccttgagaggagcatactccaaggtcccaa 1458404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 2428144 - 2428111
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||| |||||||||||||||    
T  2428144 gagaccttgagaggagcatactccaaggtcccaa 2428111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 29695324 - 29695368
Alignment:
Q  26 ggaggattcgaatgtgagaccttgagaggagcacactccaaggtc 70  Q
    ||||||||| ||  ||||||||||||||||||| |||||||||||    
T  29695324 ggaggattcaaacttgagaccttgagaggagcatactccaaggtc 29695368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 6384013 - 6384047
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  6384013 tgagaccttgagaggagcacactccaaggtcccaa 6384047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 6691561 - 6691591
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtc 70  Q
    |||||||||||||||||||||||||||||||    
T  6691561 tgagaccttgagaggagcacactccaaggtc 6691591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 9208334 - 9208276
Alignment:
Q  16 attggcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||| ||| ||| |||||  ||||||||||||||||||| |||||||| ||||||    
T  9208334 attggcaccagggggaatcgaacctgagaccttgagaggagcaaactccaagatcccaa 9208276  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 17149595 - 17149629
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||| ||||||    
T  17149595 tgagaccttgagaggagcacactccaagatcccaa 17149629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 31523230 - 31523268
Alignment:
Q  116 tatgaaacacggacactgacaccagacacgacgctgaca 154  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  31523230 tatgaaacactgacacagacaccagacacgacgctgaca 31523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 22683 - 22716
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||| |||||||||||||||||||||    
T  22683 gagaccttgagaagagcacactccaaggtcccaa 22716  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 28741980 - 28742013
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtccca 73  Q
    |||||||||||||||||||||||||||| |||||    
T  28741980 tgagaccttgagaggagcacactccaagatccca 28742013  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 15485430 - 15485464
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  15485430 tgagaccttgagaggagcacactccaaggtcccaa 15485464  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 32340335 - 32340381
Alignment:
Q  28 aggattcgaatgtgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||    
T  32340335 aggattcgaacctaagaccttgagaggagcacactccaaggtcccaa 32340381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 5943893 - 5943926
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||||||||||||    
T  5943893 gagaccttgagaggagcacactccaaggtcccaa 5943926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 16172994 - 16173024
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtc 70  Q
    |||||||||||||||||||||||||||||||    
T  16172994 tgagaccttgagaggagcacactccaaggtc 16173024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 17649013 - 17648979
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||| ||||||||||||||||||    
T  17649013 tgagaccttgagaggatcacactccaaggtcccaa 17648979  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 31669037 - 31669069
Alignment:
Q  42 agaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||| |||||||||||||||    
T  31669037 agaccttgagaggagcagactccaaggtcccaa 31669069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 35623277 - 35623311
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  35623277 tgagaccttgagaggagcacactccaaggtcccaa 35623311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 42799758 - 42799792
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  42799758 tgagaccttgagaggagcacactccaaggtcccaa 42799792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 18316511 - 18316543
Alignment:
Q  42 agaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||    
T  18316511 agaccttgagaggagcacactccaaggtcccaa 18316543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 53863880 - 53863912
Alignment:
Q  42 agaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||    
T  53863880 agaccttgagaggagcacactccaaggtcccaa 53863912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 31714382 - 31714348
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||| |||||||||||    
T  31714382 tgagaccttgagaggagcacacttcaaggtcccaa 31714348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 34844436 - 34844406
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtc 70  Q
    |||||||||||||||||||||||||||||||    
T  34844436 tgagaccttgagaggagcacactccaaggtc 34844406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 37944812 - 37944841
Alignment:
Q  44 accttgagaggagcacactccaaggtccca 73  Q
    ||||||||||||||||||||||||||||||    
T  37944812 accttgagaggagcacactccaaggtccca 37944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 40777078 - 40777045
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtccca 73  Q
    ||||||||||||||||||||||||||| ||||||    
T  40777078 tgagaccttgagaggagcacactccaatgtccca 40777045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 42430397 - 42430365
Alignment:
Q  42 agaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||| ||||||    
T  42430397 agaccttgagaggagcacactccaagatcccaa 42430365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 6099529 - 6099563
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  6099529 tgagaccttgagaggagcacactccaaggtcccaa 6099563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 26176312 - 26176370
Alignment:
Q  16 attggcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||| |||  || |||||| |||||||||||||||||||||| ||||||||||||    
T  26176312 attggcaccagggagaatcgaatctgagaccttgagaggagcacaccccaaggtcccaa 26176370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 43963999 - 43964033
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  43963999 tgagaccttgagaggagcacactccaaggtcccaa 43964033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 7250294 - 7250260
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||| |||||||||||||||||||||||||||||    
T  7250294 tgagatcttgagaggagcacactccaaggtcccaa 7250260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 8192490 - 8192524
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||| ||||||    
T  8192490 tgagaccttgagaggagcacactccaagatcccaa 8192524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 18825406 - 18825372
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||| |||||||||    
T  18825406 tgagaccttgagaggagcacactcctaggtcccaa 18825372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 26482158 - 26482124
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||| |||||||||    
T  26482158 tgagaccttgagaggagcacactcctaggtcccaa 26482124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 3697411 - 3697444
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||| ||||||||||||||    
T  3697411 gagaccttgagaggagcactctccaaggtcccaa 3697444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 25384600 - 25384567
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||| |||||||||||||||||||||||||||    
T  25384600 gagaccctgagaggagcacactccaaggtcccaa 25384567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 21050137 - 21050181
Alignment:
Q  26 ggaggattcgaatgtgagaccttgagaggagcacactccaaggtc 70  Q
    |||||||||| |  |||||||||||||||||||||||||||||||    
T  21050137 ggaggattcgtacttgagaccttgagaggagcacactccaaggtc 21050181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 25956305 - 25956337
Alignment:
Q  42 agaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||||||||    
T  25956305 agaccttgagaggagcacactccaaggtcccaa 25956337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 23637029 - 23637060
Alignment:
Q  43 gaccttgagaggagcacactccaaggtcccaa 74  Q
    ||||||||||||||||||||||||||||||||    
T  23637029 gaccttgagaggagcacactccaaggtcccaa 23637060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 21035155 - 21035209
Alignment:
Q  16 attggcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtc 70  Q
    ||||||||  |||||||||| |  |||| ||||||||||||||||||||||||||    
T  21035155 attggcacctggaggattcggacttgagtccttgagaggagcacactccaaggtc 21035209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 22696382 - 22696348
Alignment:
Q  40 tgagaccttgagaggagcacactccaaggtcccaa 74  Q
    |||||||||||||||||||||||||||| ||||||    
T  22696382 tgagaccttgagaggagcacactccaagatcccaa 22696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 46279078 - 46279048
Alignment:
Q  41 gagaccttgagaggagcacactccaaggtcc 71  Q
    |||||||||||||||||||||||||||||||    
T  46279078 gagaccttgagaggagcacactccaaggtcc 46279048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 18198 - 18124
Alignment:
Q  128 acactgacaccagacacgacgctgacatgtcgacgccagtaaaattccaagaaaacaacataattcaatgcaatc 202  Q
    |||| ||||||||||||||| |||||| |||||| ||  |||||||   |||||| |||||||||||||| ||||    
T  18198 acacggacaccagacacgacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatc 18124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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