View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_371 (Length: 204)
Name: NF10092A_low_371
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_371 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 5898256 - 5898103
Alignment:
| Q |
32 |
tgagatgaaggaaagacttaagacatgcaaggaatcaatttatgaattcagaattttcaatttgcatttgtctttgaaggttaaagttagattaggggat |
131 |
Q |
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| T |
5898256 |
tgagatgaaggaaagacttaagacatgcaaggaatcaatttatgaattcagaatttgcaattggcatttgtctttgaagattaaagttagattaggggat |
5898157 |
T |
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| Q |
132 |
atacaatctcatacaattttattgaagatttgcaatgaaattaatgtacaatat |
185 |
Q |
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| T |
5898156 |
atacaatcttatacaattttattgaagatttgcaatgaaattaatgtacaatat |
5898103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 5860056 - 5859909
Alignment:
| Q |
36 |
atgaaggaaagacttaagacatgcaaggaatcaatttatgaattcagaattttcaatttgcatttgtctttgaaggttaaagttagattaggggatatac |
135 |
Q |
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| T |
5860056 |
atgaaggaaagactaaa--catgcaaggaatcaacttatgaatttagaattcgcacttggcatttgtctttgaaggttaaagttagatgaggggatgtac |
5859959 |
T |
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| Q |
136 |
aatctcatacaattttattgaagatttgcaatgaaattaatgtacaatat |
185 |
Q |
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| T |
5859958 |
aatctcatacaattttattgaagatttgcaatgaaattaatgtacaatat |
5859909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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