View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_377 (Length: 202)
Name: NF10092A_low_377
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_377 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 13243928 - 13244126
Alignment:
| Q |
1 |
ttgatattgcttgcacttttttatttggattcgatcctaattgccttccttacaagtgcaatgagttagcatatattgcttatgaaaaagctcttagtgt |
100 |
Q |
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| T |
13243928 |
ttgatatttcttgcacttttttttttggattcgatcctaattgccttccttacaagtgcaatgagttatcagatattgcttatgaaaaagcttttagtgt |
13244027 |
T |
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| Q |
101 |
acttgaggatatgatattgtgtagacactatattccgaaaagtatttggaagctacaaaagtggctacaaattggtcaagagaagaagggcaaggcagc |
199 |
Q |
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| T |
13244028 |
acttgaggatatggtattgcgtagacactatattccgaaatgtatttggaagctacaaaagtggctacaaattggtctagagaagaagggcaaggcagc |
13244126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 19278551 - 19278742
Alignment:
| Q |
1 |
ttgatattgcttgcacttttttatttggattcgatcctaattgccttccttacaagtgcaatgagttagcatatattgcttatgaaaaagctcttagtgt |
100 |
Q |
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| T |
19278551 |
ttgatattacttgcatttttttatttggattcgatcctaattcccttccttacaagtacaacgagttatcggatattgcttatgtaaaagctgttagtgt |
19278650 |
T |
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| Q |
101 |
acttgaggatatgatattgtgtagacactatattccgaaaagtatttggaagctacaaaagtggctacaaattggtcaagagaagaagggca |
192 |
Q |
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| T |
19278651 |
ccttgaggatttgctattgtatagacactatatgccaaaatgtatttggaagctgcaaaagtggctacacattggtcaagagaagaagggca |
19278742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 12963313 - 12963481
Alignment:
| Q |
20 |
tttatttggattcgatcctaattgccttccttacaagtgcaatgagttagcatatattgcttatgaaaaagctcttagtgtacttgaggatatgatattg |
119 |
Q |
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| T |
12963313 |
tttatttgaatttgatcctaattgccttccttacaagttcaatgagttttcagatattgcgtatgtaaaagctatttctgtgattgaggatacgatattg |
12963412 |
T |
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| Q |
120 |
tgtagacactatattccgaaaagtatttggaagctacaaaagtggctacaaattggtcaagagaagaag |
188 |
Q |
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| T |
12963413 |
tttaggcactatattccaaaatgtttttggaagctacaaaaatggctacaaattggtcaagagaagaag |
12963481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 13080279 - 13080470
Alignment:
| Q |
11 |
ttgcacttttttatttggattcgatcctaattgccttccttacaagtgcaatgagttagcatatattgcttatgaaaaagctcttagtgtacttgaggat |
110 |
Q |
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| T |
13080279 |
ttgcacttctgtatttggatttgatcctaattgccttcctaacaatttcagtgagatatcagatatttcttatgtaaaagctatatctgtgactgaggat |
13080378 |
T |
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| Q |
111 |
atgatattgtgtagacactatattccgaaaagtatttggaagctacaaaagtggctacaaattggtcaagagaagaagggcaaggcagcaaa |
202 |
Q |
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| T |
13080379 |
gtgatcttgtcgaggcactatattccaaaatgtatttggaagctacaaaaatggttacagattggtcaagagaagaagtacaaggtagcaaa |
13080470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 13272404 - 13272217
Alignment:
| Q |
1 |
ttgatattgcttgcacttttttatttggattcgatcctaattgccttccttacaagtgcaatgagttagcatatattgcttatgaaaaagctcttagtgt |
100 |
Q |
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| T |
13272404 |
ttgatattacttgtaattttttatttggatttgatcctaattgtcttccttacaagttcaatgagcttcgagaaattgcttatgtaaaagctatttctgt |
13272305 |
T |
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| Q |
101 |
acttgaggatatgatattgtgtagacactatattccgaaaagtatttggaagctacaaaagtggctacaaattggtcaagagaagaag |
188 |
Q |
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| T |
13272304 |
gattgaggatacattattgcataggcactctgttccaaaatgtgtttggaagctacagaaatggctacatattggtcaagagaagaag |
13272217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 13086925 - 13086738
Alignment:
| Q |
1 |
ttgatattgcttgcacttttttatttggattcgatcctaattgccttccttacaagtgcaatgagttagcatatattgcttatgaaaaagctcttagtgt |
100 |
Q |
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| T |
13086925 |
ttgatattacatgcattttgttgtttggatttgatcctaggttccttccttacaagttcaatgaattaccagagattgctcatgtaaaagctatttcgat |
13086826 |
T |
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| Q |
101 |
acttgaggatatgatattgtgtagacactatattccgaaaagtatttggaagctacaaaagtggctacaaattggtcaagagaagaag |
188 |
Q |
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| T |
13086825 |
tattgaggatacaatattgtctaggcactatattccaaaatacttttggaagttacaaaaatggctacaaattggtcaagagaagaag |
13086738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 13205237 - 13205164
Alignment:
| Q |
23 |
atttggattcgatcctaattgccttccttacaagtgcaatgagttagcatatattgcttatgaaaaagctctta |
96 |
Q |
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| T |
13205237 |
atttggatttgatcctaattgccttccaaacaagtttaatgagctaacagaaattgcttatcaaaaagctctta |
13205164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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