View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_379 (Length: 201)
Name: NF10092A_low_379
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_379 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 4e-80; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 1744177 - 1744343
Alignment:
| Q |
14 |
tcgaacaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagca |
113 |
Q |
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| T |
1744177 |
tcgaacaagatccatcctcaaactcaaatctcaacaagcctattgatttcgtgaaactgtctaaagatgatttgattcacagatccaaggtgtcggagca |
1744276 |
T |
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| Q |
114 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
180 |
Q |
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| T |
1744277 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
1744343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 1738834 - 1738996
Alignment:
| Q |
14 |
tcgaacaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagca |
113 |
Q |
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| T |
1738834 |
tcgaacatgatccatcttcaaactctaatttcaacaagcctcttgattttgtgaaactatctaaagaggattcgattcacatgtccaaggtgtcagagca |
1738933 |
T |
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| Q |
114 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaagg |
176 |
Q |
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| T |
1738934 |
caaaccttttagcactatgcaagttggttcatcatctcgttttccaaataacaacaataaagg |
1738996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 1724247 - 1724323
Alignment:
| Q |
14 |
tcgaacaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgatt |
90 |
Q |
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| T |
1724247 |
tcgaacaagatccatcctcaaactcgaattccaacaagcctagtgattatgtgaagctatcaaaagatgattcgatt |
1724323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 1759999 - 1760035
Alignment:
| Q |
134 |
aagttggttcatcatcttgttttccaaataacaacaa |
170 |
Q |
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| T |
1759999 |
aagttggttcatcatctggttttccaaataacaacaa |
1760035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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