View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_41 (Length: 379)
Name: NF10092A_low_41
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 6 - 374
Target Start/End: Complemental strand, 29056524 - 29056156
Alignment:
| Q |
6 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056524 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
29056425 |
T |
|
| Q |
106 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056424 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
29056325 |
T |
|
| Q |
206 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagtatgttgagtggagtaag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29056324 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagcatgttgagtggagtaag |
29056225 |
T |
|
| Q |
306 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctgagggtaatctt |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056224 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctgagggtaatctt |
29056156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 363
Target Start/End: Original strand, 32848736 - 32848826
Alignment:
| Q |
273 |
agtggagaagcacagtatgttgagtggagtaagatccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctg |
363 |
Q |
| |
|
||||| ||||| ||| |||| || |||||||||||||| ||||| ||||||||||| ||||| |||||||| | |||||| |||||||||| |
|
|
| T |
32848736 |
agtggtgaagcgcagcatgtagaatggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggcgccaactcctg |
32848826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 2811253 - 2811322
Alignment:
| Q |
41 |
catttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaaaa |
110 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |||| ||||||| || |||||| |||||||| |
|
|
| T |
2811253 |
catttgaaacagtttttagattattttcagattctcaattttttaagaatttgtaacaaacagatgaaaa |
2811322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 21479534 - 21479629
Alignment:
| Q |
31 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatg-aaaattttgaaaagtgatt |
125 |
Q |
| |
|
||||| |||||||||||| | |||||| ||| |||| ||||||| |||||| ||| || ||| |||||||||||| |||||| | |||||||||| |
|
|
| T |
21479534 |
aacagcttctcatttgaagctgtttttagattttttttagattctgatttttttaaaaagctgtaacaaatggatgcaaaattcttaaaagtgatt |
21479629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 42429723 - 42429792
Alignment:
| Q |
31 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaa |
100 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||||| ||||||| |||||| ||| || ||| |||||| |
|
|
| T |
42429723 |
aacagcttctcatttgaaactgtttttagattatttttagattctgatttttttaaaaagctgtaacaaa |
42429792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University