View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_42 (Length: 378)
Name: NF10092A_low_42
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 356
Target Start/End: Original strand, 46901145 - 46901496
Alignment:
| Q |
5 |
cactagaggcgacggcccacacggtgggtgacaagccggtggaacagagtgacgcctctgcgatacaagcggcggaggtgagagctacggggagtaatat |
104 |
Q |
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| T |
46901145 |
cactagaggcgacggcccacacggtgggcgacaagccggtggaacagagtgacgcctctgcgatacaagcggcggaggtgagagctacggggagtaatgt |
46901244 |
T |
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| Q |
105 |
tataacaccgggaggtttggcttcaatggctcaatctgcagcagctttcaatgctgagtgtcaacgtgaggaggagaagattaagatgggagatgttctg |
204 |
Q |
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| T |
46901245 |
tataacaccgggaggtttggcttcaatggctcaatctgcagcagctttcaatgctgagtgtcaacgtgaggaggagaagattaagatgggagatgttctg |
46901344 |
T |
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| Q |
205 |
accggagcaacagcgaagctgccagctgataaggcggcgacaaggcaagatgctgctggggtggctagtgctgagatgaggaataatcctgatgctactg |
304 |
Q |
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| T |
46901345 |
accggagcaacagcgaagctgccagctgataaggcggcgacaaggcaagatgctgctggggtggctagtgctgagatgaggaataatcctgatgctactg |
46901444 |
T |
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| Q |
305 |
ctactcctggtggtgtagctgcttctgttgctgcggctgctaggctcaatga |
356 |
Q |
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| T |
46901445 |
ctactcctggtggtgtagctgcttctgttgctgcggctgctaggctcaatga |
46901496 |
T |
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