View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_47 (Length: 374)
Name: NF10092A_low_47
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 7447498 - 7447137
Alignment:
| Q |
20 |
aaatatagcattgataatttgatgagcttaaaacacacgacacatgaatatatacatcttatagaaggtgacaaaaactaaagtagtggataccatacga |
119 |
Q |
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| T |
7447498 |
aaatatagcattgataatttgatgagcttaaaacacacgacacatgaatatatacatcttatagaaggtgacaaaaactaaagtagtggataccatacca |
7447399 |
T |
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| Q |
120 |
tttggagtcaaaatgaaaatcattatgttaatggatatatatgttcccaaatcatagttaaataaacacactagctaatagcaaacaattaatttacata |
219 |
Q |
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| T |
7447398 |
tttggagtcaaaatgaaaatcattatgttaatggatatatatgttcccaaatcatagttaaataaacacactagctagtagcaaacaattaatttacata |
7447299 |
T |
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| Q |
220 |
ttgggatcattcacattatgtacaaatgcaatattattattactaatatattcttaatt---------------agtacaaacttatccattccatgcca |
304 |
Q |
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| T |
7447298 |
ttgggatcattcacattatgtacaaatgcta---tattattactaatatattctttttttttttttcttctacatgtacaaacttatccattccatgcca |
7447202 |
T |
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| Q |
305 |
ttgtagtaacatttttcattagccatgaaaaatacgtgatcatcatatccgttatcaacaccaaa |
369 |
Q |
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| T |
7447201 |
ttgtagtaacatgtttcattgggcatgaaaaatacgtcgtcatcatatccgttatcaacaccaaa |
7447137 |
T |
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